Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0831
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.0  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   6.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.7  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.7  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 171 PRIFIYNLI-QLMSVTF*TDDKNI*TYLNCIRVYINIL*LVITC 43
           P  FIYNL+   +  T   DDKN   Y + + V ++   L++TC
Sbjct: 791 PAKFIYNLVLSSLENTKDLDDKNSILYRSIVDVSVSNAVLLLTC 834


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 474 SKISHSRKFHFQWLSIFVYKCLIKFKR*IK 563
           SK   +++  FQ+LSI++ +C++ F + +K
Sbjct: 679 SKYQGTKESLFQFLSIYIPECMLPFTKLLK 708


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 647 THIFPL*RHCFSYRNLIPSIIY 712
           T I+PL  HCF  ++L+P + Y
Sbjct: 106 TKIYPL-PHCFIVKDLVPDLTY 126


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 719  FTGILYLVLNFYN*SNDVIMEICGF 645
            F G+LYL+L   N  ND + +  GF
Sbjct: 1190 FKGLLYLILYLGNYMNDYVRQAKGF 1214


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 171 PRIFIYNLIQLMSVTF*TDD 112
           PR FIYN + + + TF TDD
Sbjct: 868 PRDFIYNKLGVGNATFETDD 887


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 634 VETVLF*IVFNTYWFIYL*CPFIYFIYRL 548
           V  +L  +++N Y F+Y   PF + +YRL
Sbjct: 335 VRGILLKLIWNIYTFVYYGLPF-FAVYRL 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,813
Number of Sequences: 5004
Number of extensions: 60761
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)