Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0831
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27793| Best HMM Match : Alpha_GJ (HMM E-Value=7.6)                  28   7.0  
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)                 28   9.3  
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_27793| Best HMM Match : Alpha_GJ (HMM E-Value=7.6)
          Length = 165

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 557 LSFEFYETFINKNR*PLEMKFPRMTDFRQP 468
           LSFE YE F+N  R PL  +F +M+DF  P
Sbjct: 125 LSFEIYEMFVNSLR-PLLTRF-QMSDFICP 152


>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 291 DCYLQGCADRFLIISVPKSKTNNIG 217
           DC+   CAD  L IS+ K+K  ++G
Sbjct: 233 DCFSNACADFSLAISLKKTKVMHLG 257


>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 291 DCYLQGCADRFLIISVPKSKTNNIG 217
           DC+   CAD  L IS+ K+K  ++G
Sbjct: 113 DCFSNACADFSLAISLKKTKVMHLG 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,297,332
Number of Sequences: 59808
Number of extensions: 403451
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)