Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0830
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   122   2e-28
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   122   2e-28
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           119   1e-27
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   118   2e-27
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   118   2e-27
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           91   5e-19
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    66   1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    41   4e-04
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.4  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   7.3  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    27   9.6  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  122 bits (293), Expect = 2e-28
 Identities = 51/58 (87%), Positives = 57/58 (98%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 430
           EM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score =  104 bits (249), Expect = 4e-23
 Identities = 49/80 (61%), Positives = 59/80 (73%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 197
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 198 PPNEKPEIVKTHLRNMIIVP 257
           P  EKPE V+THLRNMIIVP
Sbjct: 75  PAGEKPEPVRTHLRNMIIVP 94


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  122 bits (293), Expect = 2e-28
 Identities = 51/58 (87%), Positives = 57/58 (98%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 430
           EM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score =  104 bits (249), Expect = 4e-23
 Identities = 49/80 (61%), Positives = 59/80 (73%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 197
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 198 PPNEKPEIVKTHLRNMIIVP 257
           P  EKPE V+THLRNMIIVP
Sbjct: 75  PQGEKPEPVRTHLRNMIIVP 94


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  119 bits (286), Expect = 1e-27
 Identities = 50/58 (86%), Positives = 57/58 (98%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 430
           EM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 92  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149



 Score =   99 bits (238), Expect = 8e-22
 Identities = 49/80 (61%), Positives = 57/80 (71%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 197
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+KKLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 198 PPNEKPEIVKTHLRNMIIVP 257
           P  EKP  V+THLRNMIIVP
Sbjct: 72  PAGEKPASVRTHLRNMIIVP 91


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  118 bits (285), Expect = 2e-27
 Identities = 49/58 (84%), Positives = 57/58 (98%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 430
           EM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 93  EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150



 Score =  101 bits (243), Expect = 2e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 197
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+KKLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 198 PPNEKPEIVKTHLRNMIIVP 257
           P  EKP  V+THLRNMIIVP
Sbjct: 73  PAGEKPAAVRTHLRNMIIVP 92


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  118 bits (284), Expect = 2e-27
 Identities = 49/58 (84%), Positives = 56/58 (96%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 430
           EM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152



 Score =  108 bits (259), Expect = 2e-24
 Identities = 49/82 (59%), Positives = 62/82 (75%)
 Frame = +3

Query: 12  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 191
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 192 EAPPNEKPEIVKTHLRNMIIVP 257
           +AP  EKPE+V+THLRNM+I+P
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMP 94


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 90.6 bits (215), Expect = 5e-19
 Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 197
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+KKLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 198 PPNE--KPEIVKTHLRNMIIVP 257
                 KPE+VKTHLRNMIIVP
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVP 98



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 37/62 (59%), Positives = 46/62 (74%), Gaps = 4/62 (6%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA----THSSRFIP 424
           EM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I        S+RFIP
Sbjct: 99  EMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIP 158

Query: 425 LK 430
           L+
Sbjct: 159 LR 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +3

Query: 18  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 191
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+KKLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 257 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 385
           E V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 168 EYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 314 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 415
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 122 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 15
           A TG H F E+L+G +  K +I +   V  LPE  L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 155 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSEMVGSIVGIYNG 292
           +G G+ A  R   GSSE E     + ++      E+ G ++  Y+G
Sbjct: 228 SGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSG 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,940,678
Number of Sequences: 28952
Number of extensions: 182449
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)