Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0828
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    29   1.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   4.2  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    25   9.8  
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 642 DNTDLGAP-AFFQNALVGIVSFGKSNANDIYPVVLTSISSFMNGS 773
           D T    P  FF++  V  VSFG     D+Y ++ +  S+  NGS
Sbjct: 114 DRTLCARPNTFFESGCVAHVSFGDPFDQDLYEILSSCGSNLKNGS 158


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 87  RSLAVQLQTAASTATAKVRTETIVPIESN 1
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 684 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 577
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 513 CRRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLL 409
           C  YT     S+ + + N +T+G+  +  DN+T+L
Sbjct: 136 CTNYTCFDYSSTTARRTNSSTIGFLASYGDNTTVL 170


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 449 RVFLLICSDGELPFKAAVYLRQPPQARTHCDQ-QRKLQGTVQ 571
           RVF+++  +GE P     +    P AR +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 233 EFYDPAYLALSLDLPVAVSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPS 391
           EF D   LAL    P  + P+    FT  L+IP+S  R+  +    Y    P+
Sbjct: 6   EFQDEL-LALESIYPSCLLPISEQSFTYTLSIPDSSVRLNIQFPLDYPNSAPT 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,520
Number of Sequences: 5004
Number of extensions: 80249
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)