Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0828
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   2.5  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   2.5  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   3.4  
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595...    28   7.8  
02_05_1091 + 34044999-34045082,34046848-34047048,34047312-340475...    28   7.8  
01_06_0125 + 26711157-26713297,26715026-26715206                       28   7.8  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 212 LKGSGSW*EQYQRTVGTIDSRWV 144
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 212 LKGSGSW*EQYQRTVGTIDSRWV 144
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 672 RRQGHPSQYCRSRGHQPGPNRR 607
           RR+ H  ++ R RG QP PNRR
Sbjct: 27  RRRRHHQRHRRRRGGQPAPNRR 48


>05_03_0608 +
           16153992-16154960,16158959-16159168,16159252-16159512,
           16160153-16160197,16160324-16160410,16160679-16160774
          Length = 555

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 540 SQ*VRACGGCRRYTAALNGSSPSEQINKNTLGYYDTL 430
           SQ +RA    R  TAA+  S     +N  T+ Y DTL
Sbjct: 360 SQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTL 396


>02_05_1091 +
           34044999-34045082,34046848-34047048,34047312-34047523,
           34047846-34048413
          Length = 354

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 402 WAEVDGMCYSYDAHILVVILLREFGMVNSKVNIRYFTGLTATGRSSDNARY 250
           W+++ G  Y  DAH+ +  L   FG  +    I  F G+       D A Y
Sbjct: 58  WSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYGVFDGHGGKDAAHY 108


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 755 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 603
           ++ GE  GVD I ++ S   D   + +E GRG    + ++     D  G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,215,315
Number of Sequences: 37544
Number of extensions: 576084
Number of successful extensions: 1549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)