Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0828
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.039
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.091
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.091
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 32 0.64
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.5
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 30 2.0
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 29 4.5
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14) 28 7.9
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 7.9
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 28 7.9
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11) 28 7.9
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 35.9 bits (79), Expect = 0.039
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 477 GNYRSRRQCICGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 656
G + R + LH+ + + + + CR+ + D +VT N FCAG + D D
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310
Query: 657 GAPAFFQNAL 686
G P N L
Sbjct: 311 GGPFSVDNPL 320
Score = 29.9 bits (64), Expect = 2.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 325 HPEFSEENYDKDVSIVRVTHAIHF 396
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 34.7 bits (76), Expect = 0.091
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 516 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----A 683
L + L + + +C+ +Y G V + CAG R+G N D G P ++
Sbjct: 223 LQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGPLVCEDNGRWY 279
Query: 684 LVGIVSFGKSNANDIYPVVLTSISSF 761
L G VS+GK + Y V ++S+
Sbjct: 280 LHGAVSYGKLHCPTTYYTVFARVASY 305
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 34.7 bits (76), Expect = 0.091
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +3
Query: 510 GNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA-- 683
G L + L + CR+QY+ DR CAG R G N D G P + +
Sbjct: 634 GTLQQAMLPIAEHSLCRKQYRV-DRTAHP---CAGEARVGAAGGCNGDSGGPLVCEQSGV 689
Query: 684 --LVGIVSFGKSNANDIYPVVLTSISSFM 764
L G VS+G Y V T +SS++
Sbjct: 690 WVLHGAVSYGARWCPTDYYTVFTRVSSYV 718
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +3
Query: 516 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----A 683
L + + + + E+C+ +Y + + CAG + D G P +
Sbjct: 87 LQQARIPIASHEDCKRKYGSG--IYSYTHLCAGEAKPNAAGACQGDSGGPLVCERNGQWT 144
Query: 684 LVGIVSFGKSNANDIYPVVLTSISSFMN 767
L G+VSFG N V T +S++++
Sbjct: 145 LYGVVSFGAGNCEVTSYTVYTKVSNYLD 172
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 669 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 580
RQG P +YCRS Q GP RR R Y +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 690 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 562
L+ H G R +PS+ C + P +++ YQS+ HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 516 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 683
LH+ + + +++ C++ Y V+ CAG AGG D D G P +
Sbjct: 252 LHQAAVPLVSRDTCQKAYNDLHYKVSSRMRCAG-YGAGGIDACQGDSGGPLVCKEGDVWY 310
Query: 684 LVGIVSFG 707
L+G +S+G
Sbjct: 311 LMGAISWG 318
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 537 VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 683
V N C++ Y+ VT N CAG + RD N D G F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368
>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
Length = 270
Score = 28.3 bits (60), Expect = 7.9
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Frame = -2
Query: 729 RCHWHCSFQKIRCLLAHFGRRQGHPSQYC------RSRGHQPGPNRRRICYQ----SRRD 580
RC + CLL F R+Q + C + +G +P P +R +C R+D
Sbjct: 172 RCCGSAKYVHQSCLLMWFDRKQDKTCELCLYKVEMKPKGLKP-PTKRFVCASGLCLQRQD 230
Query: 579 HDPCTVPCSFLCWSQ*VRACGGCRRYTAALNGSSPSEQI 463
+D F+C A G C +G SP+ +
Sbjct: 231 YDRAIARKRFVC------ASGSCLERQDYSHGPSPASDL 263
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 232 RILRSCIPRIIAGSSRRSEPG 294
RIL SCI R +GSSRR PG
Sbjct: 520 RILASCISRKPSGSSRRVFPG 540
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 735 RGRCHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICY 595
R CH F+++ LLA F R+ HP + R H P R++C+
Sbjct: 249 RQMCHPLAPFRQMCYLLAPFRRQMCHPLAHFRQMCHPLAP-FRQMCH 294
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 28.3 bits (60), Expect = 7.9
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Frame = +2
Query: 284 VSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLL 463
VS L TLL + +TT + H P T+ + L +S + RV L
Sbjct: 1237 VSATSQLYDTLLTLLSEMTPSVTTAEITAQHFHDPDIIPTTAGKAKLKRLISRFRRVTLY 1296
Query: 464 I--CSDGELP-FKAAVYLRQP-PQARTHCDQQRKLQGTVQ 571
C D E P +VY R+ Q ++R+L G VQ
Sbjct: 1297 DAGCDDAEDPDAPLSVYYREKCIQCEHDFIERRELFGPVQ 1336
>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
Length = 531
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 321 NSKVNIRYFTGLTATGRSSDNARYAGS*NSPWKQVAVER 205
N + +RYFT + + S++N + A W+Q VER
Sbjct: 67 NIREQLRYFTRIPHSTASAENHQLAEYIQDKWQQYGVER 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,575,401
Number of Sequences: 59808
Number of extensions: 667115
Number of successful extensions: 1621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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