Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0828
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.57 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.3  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 360 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 461
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 360  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 455
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 384 CHPLRPKHPAGCYYPTRCRNTPG 452
           C P+RPK P G   P  CR  PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 138 YSYPS*INGSNSALVLFSPTTTTFQLL 218
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 666 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 562
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 666 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 562
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 229  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 50
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 49   SY 44
             Y
Sbjct: 964  DY 965


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 600  CYQSRRDHDPCTVPCSFLCWSQ*VRACGGCRR--YTAALNGSSPSEQINK 457
            C +   D   C   C  +C  Q  + CG C R  Y   ++G+S + ++++
Sbjct: 1868 CTEPCTDKLKCGHACLGICGEQCPKICGTCERNKYIECVSGTSSTSRVHR 1917


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,052,816
Number of Sequences: 27780
Number of extensions: 472094
Number of successful extensions: 1229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)