Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0828
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.9  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 402 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 289
           W +  G C S   HI++V L  EFG++ + K++  ++ G
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/72 (20%), Positives = 28/72 (38%)
 Frame = -3

Query: 572 LVLFPAVFFVGHNEFELVEVAADTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWMFGPK 393
           +V+F  V F+ H + + V   A + P    + +PS   ++P      C       + G  
Sbjct: 384 IVIFSVVGFMAHEQQKPVADVAASGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILIGLD 443

Query: 392 WMACVTRTMLTS 357
              C     +T+
Sbjct: 444 SQFCTVEGFITA 455


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 428 WIIAPCWMFGPKWMACVTRTMLTSL 354
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 428 WIIAPCWMFGPKWMACVTRTMLTSL 354
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/72 (20%), Positives = 28/72 (38%)
 Frame = -3

Query: 572 LVLFPAVFFVGHNEFELVEVAADTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWMFGPK 393
           +V+F  V F+ H + + V   A + P    + +PS   ++P      C       + G  
Sbjct: 331 IVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILIGLD 390

Query: 392 WMACVTRTMLTS 357
              C     +T+
Sbjct: 391 SQFCTVEGFITA 402


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 428 WIIAPCWMFGPKWMACVTRTMLTSL 354
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 375 SNTCHPLRPKHPAGCYYPTRCRNTPGYF 458
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 666 QGHPSQYCRSRGHQP 622
           Q HPSQY   RG  P
Sbjct: 320 QHHPSQYHPHRGSSP 334


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 212 LKGSGSW*EQYQRTVGTIDSR 150
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,946
Number of Sequences: 438
Number of extensions: 6001
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)