Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0828
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.53
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.53
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.6
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.6
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.6
At5g25170.1 68418.m02984 expressed protein 28 6.5
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 28 6.5
At5g50670.1 68418.m06279 squamosa promoter-binding protein, puta... 28 8.6
At5g50570.2 68418.m06264 squamosa promoter-binding protein, puta... 28 8.6
At5g50570.1 68418.m06263 squamosa promoter-binding protein, puta... 28 8.6
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof... 28 8.6
At1g11120.1 68414.m01273 expressed protein 28 8.6
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 456 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 352
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 456 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 352
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 212 LKGSGSW*EQYQRTVGTIDSRWV 144
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 212 LKGSGSW*EQYQRTVGTIDSRWV 144
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 212 LKGSGSW*EQYQRTVGTIDSRWV 144
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 599 QILRRFGPGWWPRLRQY*LGCPCLLP 676
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 645 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 755
N +G AF NA + FG +N IYP +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
>At5g50670.1 68418.m06279 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 NYRSRRQCI-CGNLHKLELIVTNKENCREQYKGHDR 584
N +R C C H LE K +CR++ GH+R
Sbjct: 135 NGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNR 170
>At5g50570.2 68418.m06264 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 NYRSRRQCI-CGNLHKLELIVTNKENCREQYKGHDR 584
N +R C C H LE K +CR++ GH+R
Sbjct: 135 NGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNR 170
>At5g50570.1 68418.m06263 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 NYRSRRQCI-CGNLHKLELIVTNKENCREQYKGHDR 584
N +R C C H LE K +CR++ GH+R
Sbjct: 135 NGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNR 170
>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 379
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 574 PLYCSLQFSLLVTMSSSLWRLPQ 506
P Y L FS+LVT +SLW L Q
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQ 234
>At1g11120.1 68414.m01273 expressed protein
Length = 367
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 769 PFMKELMLVSTTG*MSLALLFPKDTMPTSAFWKKAGAPKSVLS*SRPPA 623
P M M V + G +++L P D +PTSA K P S + +RPP+
Sbjct: 84 PGMDSRMTVYSNG---VSVLMPGDDIPTSATADKKDDPVSGKNTARPPS 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,620
Number of Sequences: 28952
Number of extensions: 435839
Number of successful extensions: 1115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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