Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0827
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    65   9e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    29   0.95 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   2.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.7  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.9  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   8.9  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 33/56 (58%), Positives = 36/56 (64%)
 Frame = +3

Query: 87  KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPI 254
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERI 85



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 NDTPTSLEMEEGDTIEVYQQQTGG 331
           + TP  L+ME+GD IE   +Q GG
Sbjct: 88  DQTPAELDMEDGDQIEAVLEQLGG 111


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 60  INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVR 230
           IN+K    A + K ++ HI +   G+ NA+V+ KI K   ++  +   CD+    ++ V 
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKL---LESVD 214

Query: 231 FRFDGQPIMRMT 266
            R D Q + R T
Sbjct: 215 MRRDIQEVFRAT 226


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 548 NLPYHKLFETHNACVA--RLCYYVSQNYFLTL 459
           N+P HKL+ T+  C+A  +L  Y   NY+L L
Sbjct: 359 NIPTHKLWCTYCLCLAHYKLGDYEESNYWLNL 390


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 392  LILTHWRWSILKIIKFTLGTLLR 324
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 185 HQFPERCVFLYFELYNCV 132
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 152  FELYNCVILT*YFQINVFVFSLLFI 78
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 185 HQFPERCVFLYFELYNCV 132
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 31  SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 144
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 251 NNENDTPTSLEMEEGD 298
           N EN+ PTS E EEG+
Sbjct: 114 NQENNEPTSEEFEEGE 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,327
Number of Sequences: 5004
Number of extensions: 59867
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)