Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0827
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     66   2e-11
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     65   7e-11
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308...    34   0.11 
01_06_1364 + 36684937-36685281                                         34   0.14 
07_03_0989 + 23161020-23161412                                         30   1.7  
07_03_0990 + 23173868-23174200                                         29   4.0  
01_04_0034 + 15318509-15319567                                         28   9.3  

>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/54 (55%), Positives = 37/54 (68%)
 Frame = +3

Query: 87  KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQ 248
           +G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + M  + F FDG+
Sbjct: 15  EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGR 68



 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 266 TPTSLEMEEGDTIEVYQQQTGG 331
           TP  LEME+GD I+    QTGG
Sbjct: 75  TPDELEMEDGDEIDAMLHQTGG 96


>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
 Frame = +3

Query: 78  DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 242
           DEKK     G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + ++ + F FD
Sbjct: 8   DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67

Query: 243 GQ 248
           G+
Sbjct: 68  GR 69



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 254 NENDTPTSLEMEEGDTIEVYQQQTGG 331
           N   TP  LEME+GD I+    QTGG
Sbjct: 72  NAEQTPDQLEMEDGDEIDAMLHQTGG 97


>01_05_0651 +
           23930455-23930457,23930543-23930636,23930764-23930849,
           23930930-23931108,23932275-23932482,23932808-23932975
          Length = 245

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 57  HINLKMADEKKGENEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 233
           HI+L  + E+    E + + V  QD A   QF++ K     KL  AY  +  LS+  + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214

Query: 234 RFDGQPI 254
            FDG  +
Sbjct: 215 AFDGDKV 221


>01_06_1364 + 36684937-36685281
          Length = 114

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 63  NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRF 239
           +LK+   + G     I + V  Q  A V F IK    LR++M+ YC +  L  + V+F  
Sbjct: 17  DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76

Query: 240 DGQPIMR 260
           D    +R
Sbjct: 77  DDGRFVR 83


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 99  EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQ 248
           E++ LKV G D   V   + +   L+ LM+ Y DR+   +Q    RF FDG+
Sbjct: 37  EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGR 88



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 266 TPTSLEMEEGDTIEVYQQQTGGVS 337
           TP  L+ME+GD +  +++  GG +
Sbjct: 95  TPAELQMEDGDEVNFFEELIGGAA 118


>07_03_0990 + 23173868-23174200
          Length = 110

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 266 TPTSLEMEEGDTIEVYQQQTGGVS 337
           TP  L+ME+GD ++ +++  GG +
Sbjct: 87  TPAELDMEDGDEVDFFEELIGGAA 110



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 87  KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQ 248
           K   E++ LKV   D   V   ++    L+ LM+ Y DRA   +Q    RF +DG+
Sbjct: 25  KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGR 80


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 257 ENDTPTSLEMEEGDTIEVYQQQTG 328
           ++ TP  L++E+GDTI    +Q G
Sbjct: 329 DSQTPDDLKLEDGDTIHAIARQVG 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,230,821
Number of Sequences: 37544
Number of extensions: 346550
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)