Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0827
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    56   3e-08
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    56   3e-08
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    56   3e-08
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      29   4.7  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    29   4.7  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
 Frame = +3

Query: 72  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 242
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 243 GQPI 254
           G+ I
Sbjct: 61  GRRI 64



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 254 NENDTPTSLEMEEGDTIEVYQQQTGG 331
           N++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 65  NDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
 Frame = +3

Query: 72  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 242
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 243 GQPI 254
           G+ I
Sbjct: 61  GRRI 64



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 254 NENDTPTSLEMEEGDTIEVYQQQTGG 331
           N++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 65  NDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
 Frame = +3

Query: 72  MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 242
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 243 GQPI 254
           G+ I
Sbjct: 61  GRRI 64



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 254 NENDTPTSLEMEEGDTIEVYQQQTGG 331
           N++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 65  NDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 123 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDG 245
           G D +IVQF I+   P+ +L     DR G+ +   +   DG
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDG 623


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 123 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDG 245
           G D +IVQF I+   P+ +L     DR G+ +   +   DG
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDG 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,287
Number of Sequences: 27780
Number of extensions: 345812
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)