Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0826
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    29   5.4  
AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 115 LPTRPMNALAGLLGGNAESVICFICL 192
           LPT  +N + G  G    S+IC ICL
Sbjct: 39  LPTASLNMILGHNGSGKSSIICGICL 64


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 144 WTF-GGERGECYLFYLSI*CFFRFKCVIAVAYYLFSICNV 260
           W++  G     +L ++++ CF+ F+      Y+ F +CNV
Sbjct: 263 WSYMKGTHTISFLSFMALLCFYNFQRSPMTTYFAFFVCNV 302


>AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical
           protein C18B12.4 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 676 KQTPQNRNDRVLNNKYGYPTASSE 605
           +QT  N ND +L N+   PT+SSE
Sbjct: 397 QQTTSNDNDHLLENEVSDPTSSSE 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,459,322
Number of Sequences: 27780
Number of extensions: 344076
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)