Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0826
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat...    29   5.1  
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    28   6.7  
At3g62340.1 68416.m07003 WRKY family transcription factor              28   8.8  

>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK1 [Nicotiana tabacum]
           gi|16904222|gb|AAL30818
          Length = 594

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 161 FPPKSPARAFIGRVGRRAYGPPDGE*LPSPMD 66
           FPP SPA+  +  + RR   PP     P P D
Sbjct: 81  FPPPSPAKPIMAALRRRRGAPPQPRDEPIPED 112


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 230 HCYYTFKPEETLNRQIKQITLSAFPPK 150
           HCY  F+P    N + + I  S+FPPK
Sbjct: 492 HCY--FRPNTMTNPENRNIEASSFPPK 516


>At3g62340.1 68416.m07003 WRKY family transcription factor
          Length = 277

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 49  PLAFLKSMGDGNHSPSGGPYARLPTRPMNALAGLLGGNAE 168
           P+ F+  +G   H+P+  P    PT P ++ +  + G+ E
Sbjct: 34  PVGFMDLLGVHRHTPTHTPLMHFPTTPNSSSSEAVNGDDE 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,174
Number of Sequences: 28952
Number of extensions: 309381
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)