Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0825
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 2.4
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 30 2.4
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 2.4
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 3.1
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 29 4.1
01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707 29 4.1
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 5.4
01_06_0125 + 26711157-26713297,26715026-26715206 28 7.2
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 9.5
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 9.5
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 161 LKGSGSW*EQYQRTVGTIDSRWV 93
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -1
Query: 626 LEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLVLFLQFSLLVTMSSSLWRLPSDTL 447
LEE + ++ + AA Q ++ ++ V F SL T+SS+L R+PS +L
Sbjct: 353 LEENQQANLAQGLTAAIGQPQLQQNWIHQEGNGLSDV-FSGSSLTNTLSSTLQRVPSSSL 411
Query: 446 PP*TVVPHPSRSTKIPWGITTP 381
PP ++ +P I P
Sbjct: 412 PPQELLECKQAKVSMPPSIRIP 433
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 161 LKGSGSW*EQYQRTVGTIDSRWV 93
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 621 RRQGHPSQYCRSRGHQPGPNRR 556
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 2 LAAVCSCTASDLGRPVSIGEHPSLVQIEVFLPILNQWFQQCAG 130
L VC+ LG+P+S+ P L+Q + LP+ N + G
Sbjct: 387 LNRVCALATKFLGKPISLLSPPPLLQPHLSLPMPNSSLELAIG 429
>01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707
Length = 293
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 390 YDTLLDNSTLLDVWAEVDGMCYSYDAHILVVILLREFGMVNSKVNKDISPG 238
Y+ ++D+ LL W + G ++ + +L E VN K + D+ PG
Sbjct: 208 YNAVMDSWGLLFNWGQDGGQGIAFQLRDVRARVLGEVAWVNMKAHVDVDPG 258
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 60 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 239
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 240 PV 245
V
Sbjct: 460 SV 461
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 704 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 552
++ GE GVD I ++ S D + +E GRG + ++ D G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 471 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 331
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 297 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 407
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,361,454
Number of Sequences: 37544
Number of extensions: 554067
Number of successful extensions: 1468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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