Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0824
         (514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    28   0.042
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    28   0.042
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    28   0.042
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   3.7  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   4.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 28.3 bits (60), Expect = 0.042
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 RSSPTTEHAT*RMLHAAATIRKISNTTPP 294
           RSSPTT  A   +  A  TI+ +SNT PP
Sbjct: 250 RSSPTTATA---IASATVTIQNVSNTIPP 275


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 0.042
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 RSSPTTEHAT*RMLHAAATIRKISNTTPP 294
           RSSPTT  A   +  A  TI+ +SNT PP
Sbjct: 198 RSSPTTATA---IASATVTIQNVSNTIPP 223


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 0.042
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 RSSPTTEHAT*RMLHAAATIRKISNTTPP 294
           RSSPTT  A   +  A  TI+ +SNT PP
Sbjct: 381 RSSPTTATA---IASATVTIQNVSNTIPP 406


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 264 NPENKQHN 287
           NP+NKQHN
Sbjct: 230 NPKNKQHN 237


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 151 DAAKSRVWNAHAAWTWFPARSSP 219
           D      ++ HA W  F A +SP
Sbjct: 195 DIINVMTYDFHAMWAGFTAENSP 217


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 280 NTTPPRFDPSFQPK*FVNPNLSCNYM 357
           N+    FD +FQ    V  N SC Y+
Sbjct: 94  NSADEGFDGTFQTNVVVKHNGSCLYV 119


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 280 NTTPPRFDPSFQPK*FVNPNLSCNYM 357
           N+    FD +FQ    V  N SC Y+
Sbjct: 94  NSADEGFDGTFQTNVVVKHNGSCLYV 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,740
Number of Sequences: 336
Number of extensions: 2629
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)