Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0824
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0845 + 7918638-7919423                                           30   0.95 
08_01_0027 - 195321-195932,197206-197415                               28   3.8  
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    28   5.1  
01_06_1751 + 39656276-39656279,39656411-39656515,39656680-396568...    28   5.1  
02_04_0153 - 20330775-20330831,20330913-20330999,20333119-203331...    27   6.7  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     27   8.8  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    27   8.8  
05_01_0187 + 1349725-1352238                                           27   8.8  

>12_01_0845 + 7918638-7919423
          Length = 261

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 311 KLGSKRGGVVLLIFRIVAAA*SMRYVACSVVGLDRAGNQVQAAWAFHTR---DLAASVLA 141
           +  ++RG   LL+  ++A A S+     ++ G+ RAG+   AA A H R      A+  A
Sbjct: 130 RAAARRGACALLVMEVLAEATSLAQNLWTLAGMRRAGS--PAAAAAHARLSLPFYAAYTA 187

Query: 140 *WACLGSRNFVRDV 99
             A LG   FVR V
Sbjct: 188 MRAVLGPAWFVRMV 201


>08_01_0027 - 195321-195932,197206-197415
          Length = 273

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 139 YARTDAAKSRVWNAHAAWTWFPARS-SPTTEHA 234
           Y R+D+ K  +WN      WFP++S SPTT+ +
Sbjct: 26  YRRSDSFKIGIWN------WFPSQSQSPTTQRS 52


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 265 IRKISNTTPPRFDPSFQ 315
           +RK SN TPPRF PS +
Sbjct: 413 LRKKSNRTPPRFRPSME 429


>01_06_1751 +
           39656276-39656279,39656411-39656515,39656680-39656801,
           39657826-39658869
          Length = 424

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 238 MWHVLWWDLTGRETR 194
           MW +L+WDL GRE +
Sbjct: 45  MWELLFWDLLGREKK 59


>02_04_0153 -
           20330775-20330831,20330913-20330999,20333119-20333157,
           20333596-20333754,20334035-20334104,20334187-20335035,
           20335270-20335562,20335640-20336347
          Length = 753

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 148 TDAAKSRVWNAHAAWTWFPARSSPTTEHAT 237
           T+A K R W A   W  FPA +    +  T
Sbjct: 69  TEAEKERAWTAMEKWFTFPAEAKDRLKRKT 98


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 239 YVACSVVGLDRAGNQVQAAWAFHTRDLAA 153
           +  CS+VGLD  G   QA  AF T+ + +
Sbjct: 246 HAMCSMVGLDVNGGNDQAVVAFQTKTVVS 274


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 127 KHAHYARTDAAKSRVWNAHAAWTWFPAR 210
           +HAHY  TDA     W A  ++ +  AR
Sbjct: 29  EHAHYNHTDACHHLRWTAKESYEYMYAR 56


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 239 YVACSVVGLDRAGNQVQAAWAFHTRDLAA 153
           +  CS+VGLD  G   QA  AF T+ + +
Sbjct: 209 HAMCSMVGLDVNGGNDQAVVAFQTKTVVS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,721
Number of Sequences: 37544
Number of extensions: 273466
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)