Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0824
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 31   0.74 
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                29   3.0  
SB_12532| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-09)                 27   9.1  
SB_56311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 105 PHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCSSYNPENKQ 281
           P ++P+TQ  P  Q    Q+P  + P S    S P   +    + T  +CSSY P + Q
Sbjct: 271 PPQLPSTQL-PSTQLPSTQLPSTQLP-STQFPSTPAPINPTPINPTPINCSSYQPNSHQ 327


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 96   CNVPHKI-PATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCSSYNPE 272
            C  P+ +       P+C+   R +P  E  C  D      K++   C I  ASC  ++ +
Sbjct: 4219 CTKPYSVCKVKDEKPVCECPSRCLPDKEPVCGAD-----GKTYRNLCEIRKASCEGWHRD 4273

Query: 273  NKQ 281
            N++
Sbjct: 4274 NRR 4276


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = +3

Query: 117  PATQACPLCQDRCRQIPGMECP--CSLDLVSRPVKSHHRTCHITHASCSSYNPE 272
            P+   C  C D    + G  C   C+              CH T ASCSS  P+
Sbjct: 879  PSANDCITCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHPTCASCSSSGPK 932


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 162  IPGME-CPCSLDLVSRPVKSHHRTCHITHASCSSYNPENKQHN 287
            +P  E CP  +     P + + R CH+    C  + P ++ HN
Sbjct: 1837 VPSYEKCPSQVTSDEWPCEHYKRRCHVMFPCCLKFFPCHRCHN 1879


>SB_12532| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-09)
          Length = 297

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 244 CVMWHVLWWDLTGRETRSRLHGHSIPGIWRHLSWHSGHAWVAGIL*GT 101
           C  W V    LTG    ++ +   IP IWR ++ H   A +  +L GT
Sbjct: 124 CASWLVPTL-LTGLSISAQFNWSKIPVIWRKIAMHQPIAVIIILLMGT 170


>SB_56311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 123 TQACPLCQDRCRQIPGMECPCSLDL 197
           TQ CP  +DRC+ + G+     L L
Sbjct: 8   TQVCPTSKDRCKHVRGVNTSQMLQL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,267
Number of Sequences: 59808
Number of extensions: 325973
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)