Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0824
         (514 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix transcri...    30   4.1  
BC032846-1|AAH32846.2|  304|Homo sapiens developmental pluripote...    30   5.5  
AK001575-1|BAA91765.1|  294|Homo sapiens protein ( Homo sapiens ...    30   5.5  
U02609-1|AAA18945.1|  519|Homo sapiens transducin-like protein p...    29   7.2  
BC053361-1|AAH53361.1|  460|Homo sapiens zinc finger protein 384...    29   7.2  
AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.                 29   7.2  
AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open readi...    29   9.5  

>AB070238-1|BAB85125.1|  576|Homo sapiens nuclear matrix
           transcription factor4 protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +3

Query: 132 CPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCSSYNPENKQHN 287
           C  CQ   RQ+  ++    +    RP K  H  C       S+     +QHN
Sbjct: 347 CSYCQKAFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHN 398


>BC032846-1|AAH32846.2|  304|Homo sapiens developmental pluripotency
           associated 4 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 187 LHGHSIPGI---WRHLSWHSGHAWV 122
           +HG S+P     W HL +H+G AWV
Sbjct: 233 VHGKSLPADTDGWVHLQFHAGQAWV 257


>AK001575-1|BAA91765.1|  294|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10713 fis, clone NT2RP3000980. ).
          Length = 294

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 187 LHGHSIPGI---WRHLSWHSGHAWV 122
           +HG S+P     W HL +H+G AWV
Sbjct: 223 VHGKSLPADTDGWVHLQFHAGQAWV 247


>U02609-1|AAA18945.1|  519|Homo sapiens transducin-like protein
           protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 106 LTKFRLPKHAHYART-DAAKSRVWNAHAAWTWFPARSSPTTEHAT*RM 246
           L K    K+    RT DA + +VW   A WT  P+    T E ++ RM
Sbjct: 472 LVKLWTIKNNECVRTLDAHEDKVWGLQAGWTTTPSLGPVTPESSSGRM 519


>BC053361-1|AAH53361.1|  460|Homo sapiens zinc finger protein 384
           protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 129 ACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCSSYNPENKQHN 287
           +C  C+   RQ+  ++    +    RP K  H  C       S+     +QHN
Sbjct: 230 SCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHN 282


>AK095734-1|BAC04618.1|  515|Homo sapiens NA.  protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 129 ACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCSSYNPENKQHN 287
           +C  C+   RQ+  ++    +    RP K  H  C       S+     +QHN
Sbjct: 285 SCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHN 337


>AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open reading
           frame 68 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 141 CQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHAS-CSSY 263
           C   C+       PC +  +  P     +TC++  AS C SY
Sbjct: 102 CPTPCQTYVKCPAPCQMTYIKSPAPCQTQTCYVQGASPCQSY 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,666,952
Number of Sequences: 237096
Number of extensions: 1548036
Number of successful extensions: 6592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6592
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)