Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0824
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu...    31   0.60 
At5g08440.1 68418.m00994 expressed protein                             29   2.4  
At5g44360.1 68418.m05432 FAD-binding domain-containing protein s...    27   5.6  
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr...    27   5.6  
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar...    27   5.6  
At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related conta...    27   9.8  
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p...    27   9.8  

>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
           subunit-related contains weak similarity to
           Swiss-Prot:Q13888 TFIIH basal transcription factor
           complex p44 subunit (Basic transcription factor 2 44 kDa
           subunit, BTF2-p44, General transcription factor IIH
           polypeptide 2) [Homo sapiens]
          Length = 421

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 96  CNVPHKIPATQACPLCQDRCRQIPGMECP-CSLDLVSRP--VKSHH 224
           C+   KI A   CP C+ R   +P  EC  C L LVS P   +S+H
Sbjct: 290 CHKEVKIGAGYMCPRCKARVCDLP-TECTICGLTLVSSPHLARSYH 334


>At5g08440.1 68418.m00994 expressed protein
          Length = 726

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 509 IIIFNIKLNYASPTCNKYRSMFVYIIYYL--SIALH*KSKYNINTAYHYVLLFM*LQERF 336
           II  NI+L YA     + RS+FV I+  L    +LH +   + +      +LF  LQE+ 
Sbjct: 286 IIEENIRLTYALQAAEQERSLFVSILLPLLSEYSLHPQISDSQSIVSSVKVLFRHLQEKL 345

Query: 335 GLT 327
            +T
Sbjct: 346 NVT 348


>At5g44360.1 68418.m05432 FAD-binding domain-containing protein
           similar to  SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 532

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 192 DLVSRPVKSHHRTCHITHASCSSYNPENKQHNP-ATFRSQFSAKII 326
           D  S P K    +C  TH+  S  NP++  H P +   + FS  +I
Sbjct: 23  DSSSSPSKDQFLSCMSTHSDSSFINPKSFIHKPDSRVYTDFSQSLI 68


>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 467

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 357 HVVTREIRINKLFWLKTGIETWRGCVAYFPDCSCCMKHALCG 232
           HVV        LFWL + + +  GCV  + D  C +K    G
Sbjct: 56  HVVEGSDWDYALFWLASNVNSSDGCVLIWGDGHCRVKKGASG 97


>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
           auxin response factor 10 GI:6165644 from [Arabidopsis
           thaliana]; identical to cDNA auxin response factor 10
           (ARF10) mRNA, partial cds GI:6165643
          Length = 693

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 237 ITHASCSSYNPENKQHNPATFRSQFSAK 320
           ++  + SSY   NK H+PA F S F+ +
Sbjct: 463 LSDLNLSSYTGNNKLHSPAMFLSSFNPR 490


>At1g55460.1 68414.m06343 Kin17 DNA-binding protein-related contains
           similarity to zinc finger protein rts2 GB:U16133
           GI:563244 from [Saccharomyces cerevisiae]
          Length = 411

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 132 CPLCQDRCRQIPGMECPC 185
           C +CQ +CR   G +C C
Sbjct: 28  CQMCQKQCRDENGFKCHC 45


>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
           putative (ENT8) identical to putative equilibrative
           nucleoside transporter ENT8 [Arabidopsis thaliana]
           GI:28207664; contains similarity to SWISS-PROT:O54699
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type)
           [Rattus norvegicus]; contains Pfam profile PF01733:
           Nucleoside transporter
          Length = 389

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 36  SSSHCVYLISCPVVQIKLS*CNVPHKIPATQ 128
           +S+H  +++S  ++      CNV HK+P  Q
Sbjct: 184 TSAHSYFIVSSTILLCCFISCNVLHKLPVMQ 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,663
Number of Sequences: 28952
Number of extensions: 216714
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)