Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0822
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 43 4e-05
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 42 1e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 37 0.004
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 37 0.004
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 34 0.021
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 34 0.027
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 33 0.048
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 33 0.063
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 32 0.11
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 31 0.15
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 30 0.34
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 29 0.59
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.78
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 29 1.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 1.0
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 28 1.4
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 28 1.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 28 1.4
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 1.4
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 2.4
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 4.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 5.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 7.3
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 26 7.3
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 26 7.3
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 9.6
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 9.6
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 544 SDPDVVKKRSHKIRQDICPYCG---KITKS--LKAHALVHTGEKKYKCEICSKGFLSSGG 708
S K S +C + G + T++ LK+H HT + ++C IC K F
Sbjct: 555 SSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHD 614
Query: 709 LTYHKKKHTASKDFKCVS 762
H++ HT K F CV+
Sbjct: 615 KRRHEQLHTGIKAFACVT 632
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 595 CPY--CGKITKS---LKAHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKKKHTASKDFK 753
CPY CGK L+ H H+ E+ + C+ CSK F L HK+ HT K F
Sbjct: 25 CPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 754 C 756
C
Sbjct: 85 C 85
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +1
Query: 622 SLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKCVSHSRLRH*RILEDH 801
++++H H ++ Y+C++C GF+ L H + H + + C R L H
Sbjct: 459 NVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRH 518
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 595 CPYCGKITKSLK---AHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKKKHT 735
CP C K L+ H HTGEK + C C+K F S LT H + HT
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 658 KKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
+ YKC +C+K F T H + HT K C
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVC 56
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 601 YCGKITKSLKAHALVHTG----EKKYKCEICSKGFLSSGGLTYHK 723
+C IT A + H G K Y+CE+CSK + + GL YH+
Sbjct: 375 HCSPITTPTPA-PIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 655 EKKYKCEI--CSKGFLSSGGLTYHK 723
+K YKC + C K + + GL YHK
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYHK 371
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 33.9 bits (74), Expect = 0.027
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 589 DICPYCGKITKS---LKAHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKK 726
D CP G + S L AH HTGEK + C + C + F S L H +
Sbjct: 78 DDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMR 128
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 33.1 bits (72), Expect = 0.048
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 613 ITKSLKAHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKKKHTASKDFKC 756
+TK+ K+ A G+ +YKC+ C+K F H + HT SK F C
Sbjct: 1 MTKAKKSRAY-QEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFIC 49
Score = 29.5 bits (63), Expect = 0.59
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 628 KAHALVHTGEKKYKCEICSKGFLSSGGLTYH-KKKHTASKDFKCVSHSR 771
+ H HT K + C CS F S L H +KH D +H +
Sbjct: 35 RRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQTHPK 83
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 658 KKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
K+Y CE C++ F L H + HT K F C
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 502 TDKPKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKI---TKSLKAHALVHTGEKKYKC 672
T K + + + DP+ + K++Q +C C + + LK H HT EK + C
Sbjct: 44 TSNSKPVASSTAAKKDPNAPPQ---KVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 622 SLKAHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKKKH 732
SLK H HTGE+ + C+ C K F + H++ H
Sbjct: 482 SLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 661 KYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
+Y+C C +GF L H HT + F C
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPFVC 498
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 595 CPYCGKITKSLK---AHALVHTGEKKYKCEI--CSKGFLSSGGLTYHKKKH 732
CP+C ++ + H HTGEK ++C C K F L H + H
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 29.5 bits (63), Expect = 0.59
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 658 KKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
K Y+C C + F H + HT K F+C
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFEC 34
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 601 YCGKITKSLKAHALVHTGEKKYK-CEICSKGFLSSGGLTYH--KKKH 732
+ GKI K + V + Y+ CE+C+K F S G + H KKH
Sbjct: 48 FAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKH 94
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 29.5 bits (63), Expect = 0.59
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 592 ICPYCGKITKSLKAHALVHTGEKKYKCEIC 681
+CP+C K SL +LV T E + C +C
Sbjct: 137 VCPFCNKKFSSLDVLSLV-TNEGTFACNVC 165
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.1 bits (62), Expect = 0.78
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +1
Query: 595 CPYCGKITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYH 720
CP + L+ H H K + C C++ F S L H
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 619 KSLKAHALVHT-GEKKYKCEI--CSKGFLSSGGLTYHKKKHTASKDFKC 756
K LK + H G+ ++ C C K F L H++ H K F C
Sbjct: 10 KPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSC 58
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 507 IGFLHILYSISTFSCFKIPFLCFSNFNGFSDSFTISVSLWK 385
I F H S S+ C+ + L FSNFN +S + +V+ ++
Sbjct: 3 IRFTHCFTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFR 43
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 550 PDVVKKRS---HKIRQDICPYCGKITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYH 720
P +V+KRS HK +++ P +IT HA++ +++ + + G ++S + Y+
Sbjct: 432 PLIVRKRSKDKHKSERELIPTTKEITMGDTTHAILVEFSEEHPAVLSNAG-MASRIVNYY 490
Query: 721 KKKH 732
+KK+
Sbjct: 491 RKKN 494
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +2
Query: 278 NNCISYNDILIRKLCHDVEKDFDALDQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGI 457
+N + YN L + E D A+D RN+ S ED + T+ VN+S + ++ + K +
Sbjct: 43 SNDLQYNAHLFKSSNPKEEYD-SAIDVRNDISQDEDDYKRTNDVNDSYRLVRQYEAPKEL 101
Query: 458 LKHEKVEIEYKICKKPISRK 517
L +E + Y ++ S+K
Sbjct: 102 L-NEYADESYDPMQERQSKK 120
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 111 NFKLFIKHSHDLLNERNLLKRIYFSDLNDIKVQTGIL 221
+F I HDLL+ +NLL FS K+ GIL
Sbjct: 600 SFPFDINRIHDLLSHKNLLSLKKFSRQQQTKIILGIL 636
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 99 SRTYNFKLFIKHSHDLLNERNLLKRIYFSDLNDIKVQTGILDDKRNVLN 245
+ ++F + +H L+N ++ R++FS K+Q+ I RN+L+
Sbjct: 340 NEAFSFSGYGEHGRFLINHEHMRLRVFFSSCCS-KIQSEIYSTNRNLLS 387
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 664 YKCEICSKGFLSSGGLTYHKKKHTASKDFKCVSHSR 771
++C+ C F+ GLT HK+ + + + H R
Sbjct: 139 FRCDKCDMMFVKQSGLTNHKRTYHQVETVVIIGHRR 174
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 655 EKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
++ + C+ C+K F LT HK H+ ++ C
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPC 61
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 4.2
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -2
Query: 424 FLRFIYYISITVEIFSATVFISLIQCIKVLFNI-MTKFPD*NIII*NAIVFSLY*VN*VI 248
FLRF+YY TV S + + S+ IK + + P I+ + +F+L N +
Sbjct: 1121 FLRFMYYFLPTVFSLSGSYWNSIFDYIKYAMKMSVVDAP----IVKSFELFALRLYNALS 1176
Query: 247 ELSTFLLSSNIPVCTLISLRSLK*ILFSKFLSFNKS 140
+ + ++S+I C + S S+ +L +FL ++S
Sbjct: 1177 K--NYEMNSDIKDCIVESNESMNYLLLKRFLFTHES 1210
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 281 NCISYNDILIRKLCHDVEKDFDALD 355
NC+ D++ KLC ++ + FD +D
Sbjct: 894 NCLRLADVVFMKLCVNIWERFDFID 918
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 135 SHDLLNERNLLKRIYFSDLNDI---KVQTGILDDKRNVLNSIT 254
+ LLNERNLLK + + + I G +DDK ++ T
Sbjct: 603 NESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDEST 645
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 585 PDLMRSFFNDIWVTLQQNDIL*DFRLIGFLHILY-SISTFSCFKIPFLCFSNFNGFSDSF 409
PD+ + F D+ VT ND R +G+ +L+ S F F F +G +F
Sbjct: 42 PDVFQEGFEDVSVTDDDNDNE-LLRKMGYQPVLHRSFEFFESFAASFASLDVVSGVRLTF 100
Query: 408 TISVSLWKSSAPLSSFL 358
+ +S +A S+ L
Sbjct: 101 SWGISFGGPAAYWSAML 117
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +1
Query: 496 QETDKPKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLKAHALVHTGEKKYKCE 675
+ T K K + LLQ PD + + + I + P IT SLK HA + +K
Sbjct: 125 KSTLKKKNEVDPALLQGVPDYICENPYAIIVGLNP---GITSSLKGHAFASPSNRFWKML 181
Query: 676 ICSKGFLSSGGLTYHKKK 729
SK + TY K
Sbjct: 182 NKSKLLEGNAEFTYLNDK 199
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 530 TFFKTFGLSVSCIFYIQ--FQLFHASKFPSYVFLISMVSQIHLLYQYH 393
TF L V+ +F+I F SKF +V+ + +S L YQ H
Sbjct: 18 TFMLAADLIVNVLFWILRFFVRSGLSKFSKFVYAFASISSGFLHYQLH 65
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 380 EDFHSDTDIVNESEKPLKLEKHKKGILKHEKVEIEYKICK 499
E++H + ++ E E+P K+ K + + K E E+++ +
Sbjct: 505 ENYHKEGRVIKEGEQPRKMVK-ARAVTISRKREHEFRVAE 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,414
Number of Sequences: 5004
Number of extensions: 71188
Number of successful extensions: 259
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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