Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0822
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    59   6e-11
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    48   8e-08
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    39   5e-05
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    36   4e-04
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    31   0.017
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    29   0.051
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 58.8 bits (136), Expect = 6e-11
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = +1

Query: 538 LQSDPDVVKKRSHKIRQD-ICPYCGK---ITKSLKAHALVHTGEKKYKCEICSKGFLSSG 705
           +QS   V+  R+H   +  +C  CGK    +K LK H   HTGEK Y C+IC K F  + 
Sbjct: 186 IQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNH 245

Query: 706 GLTYHKKKHTASKDFKC-VSHSRLRH*RILEDHM 804
            L  H+  H   K +KC + H      + +E H+
Sbjct: 246 VLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHI 279



 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 25/65 (38%), Positives = 37/65 (56%)
 Frame = +1

Query: 562 KKRSHKIRQDICPYCGKITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTAS 741
           K+R +K   D+C    + +  L  H  +HTGE+ +KC +CSK F+ SG L  H + HT  
Sbjct: 144 KERPYKC--DVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGE 201

Query: 742 KDFKC 756
           K + C
Sbjct: 202 KPYVC 206



 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 595 CPYCGK---ITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC-VS 762
           C  CGK   +   L  H   HTGEK Y+CE CSK F     L+ H++ HT  + +KC V 
Sbjct: 94  CNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153

Query: 763 HSRLRH*RILEDHM 804
                H   L  HM
Sbjct: 154 ERAFEHSGKLHRHM 167



 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 595 CPYCGK---ITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKCVSH 765
           C YC K   + ++L  H  +HT E+ YKC++C + F  SG L  H + HT  +  KC   
Sbjct: 122 CEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVC 181

Query: 766 SR 771
           S+
Sbjct: 182 SK 183



 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 595 CPYCGK---ITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTAS 741
           C  CGK       LK H + H GEK YKC +C + F S   +  H K H+ S
Sbjct: 234 CDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDS 285



 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 652 GEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
           GE  Y+C IC K F     LT H + HT  K ++C
Sbjct: 88  GEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQC 122



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 640 LVHTGEKKYKCEICSKGFLSSGGLTYHKKKH 732
           L +  EK Y+C +C K F        H + H
Sbjct: 54  LTNIEEKTYQCLLCQKAFDQKNLYQSHLRSH 84


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 48.4 bits (110), Expect = 8e-08
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 595 CPYCGK-ITKS--LKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
           CP C K  T+   LK H  +HTGEK Y C  C + F+    L  H + HT  + + C
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYAC 68



 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 646 HTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKCVSH 765
           HTGEK ++C  C K F     L  H + HT  K + C SH
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHC-SH 42



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 595 CPYCGKI---TKSLKAHALVHTGEKKYKCEICS 684
           C +C +      +L+ H  VHTGE+ Y CE+C+
Sbjct: 40  CSHCDRQFVQVANLRRHLRVHTGERPYACELCA 72


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 595 CPYCGKITKSLKAHAL-VHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKC 756
           C YC K+  SL A  + + T     KC +C K F     L  H + HT  K F C
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSC 73



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 595 CPYCGKITKS---LKAHALVHTGEKKYKCEICSKGF 693
           C  CGK       L+ H   HTGEK + C+ C++ F
Sbjct: 45  CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 80



 Score = 29.1 bits (62), Expect = 0.051
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 655 EKKYKCEICSKGFLSSGGLTYHKKKHT 735
           +K + C+ C K ++S G L  H + HT
Sbjct: 14  KKSFSCKYCEKVYVSLGALKMHIRTHT 40


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 625 LKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHTASKDFKCVS 762
           L+ H   H G K +KCE CS   ++   L  H K H+    ++C +
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCAN 49



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +1

Query: 595 CPYCGKITKSLKAHALVHTGEKKYKCEICSKGFLSSGGLTYHKKKHT 735
           C Y       L +H   H+   +Y+C  C+        L  H +K++
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYS 68


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 30.7 bits (66), Expect = 0.017
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
 Frame = +1

Query: 595 CPYCGKIT---KSLKAHALVHTGEKK--YKCEICSKGFLSSGGL-----TYHKKK 729
           C  CGK+     SLK H      E++  Y+C IC + + S   L     TYHK +
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSR 62



 Score = 25.4 bits (53), Expect = 0.63
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 649 TGEKKYKCEICSKGFLSSGGLTYH-KKKHT-ASKDFKCVSHSRL 774
           + +K + C++C K   S   L  H   KH    ++++CV   R+
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERV 44


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +1

Query: 595 CPYCGKITK---SLKAHALV--HTGEKKYKCEICSKGFLSSGGLTYHKK-KHTAS 741
           CPYC +      SLK H        +  Y CE C++ + +   LT HK  +H  S
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGS 62


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 727 FSC-GMLSLPKTKTLYYKFHIYISFLLYVLV 638
           F+C  ++ + K +  YY FH YI   L V++
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIPTCLIVIM 261


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +2

Query: 344  DALDQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEK 472
            D +     DSG+ +       V++ ++  ++ K+ K ++ HE+
Sbjct: 1064 DGITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVMIHEE 1106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,949
Number of Sequences: 438
Number of extensions: 4447
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)