Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0821
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.13 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   6.5  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   8.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 626 YFCAVKFIMICKVHISFAC---LCTCVDLCYYKITLFYSICVLTSVGLIYFYKFYL 784
           Y+    FI I  +H+ F C   +  C+   YY   LF ++ +L  V + YFY  +L
Sbjct: 213 YYFYSAFI-IFTIHLLFYCVLIILLCIYYFYYAFILF-TVHLLLLVCIYYFYYMHL 266



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/49 (20%), Positives = 22/49 (44%)
 Frame = +2

Query: 626 YFCAVKFIMICKVHISFACLCTCVDLCYYKITLFYSICVLTSVGLIYFY 772
           YF     I++C  +  +A +   V L +     ++ + +   + + YFY
Sbjct: 102 YFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFY 150


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 281 LLELSMCMSAVYKCTEAGLALDN 213
           L   S+C++  Y C ++G   DN
Sbjct: 241 LSTFSICITQFYYCYDSGFNSDN 263


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  TKEAQHHPIRHKHSHQA 104
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 220 RASPASVHLYTADMHMLSSNKCG 288
           R  PA VHL   ++H      CG
Sbjct: 301 RLGPAGVHLRKKNIHSCHIPGCG 323


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 620 RGYFCAVKFIMICKVHISFACLCTCV 697
           R Y      I++  V ISF  L +CV
Sbjct: 525 RFYIACGIMILVANVAISFGYLISCV 550


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 620 RGYFCAVKFIMICKVHISFACLCTCV 697
           R Y      I++  V ISF  L +CV
Sbjct: 525 RFYIACGIMILVANVAISFGYLISCV 550


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,310
Number of Sequences: 336
Number of extensions: 2919
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)