Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0821
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    76   5e-15
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    44   3e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    42   1e-04
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   7.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 33/50 (66%), Positives = 43/50 (86%)
 Frame = +3

Query: 114 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHA 263
           ++  LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H++ A
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTA 195



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG++G K+
Sbjct: 198 LAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKT 242


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 57  KEAQHHPIRHKHSHQAGREEEGAL---VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 227
           ++A H+    K +++A +     +   +V+A D +PIE++L LP LC    VPY  V  K
Sbjct: 24  QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSK 83

Query: 228 SRLG 239
           + LG
Sbjct: 84  AALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 66  QHHPIRH-KHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           Q H +R  K   +A R+ E  LV++A D+ P++++  +P LC    VPY     K  LG
Sbjct: 51  QKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLG 109


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 632 CAVKFIMICKVHISFACLC 688
           C+ K I +C +HI + C C
Sbjct: 675 CSCKSITVCPLHIEYLCKC 693


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 94   LCLCRIGWC 68
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,099
Number of Sequences: 5004
Number of extensions: 45921
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)