Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0821
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    85   6e-17
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    85   8e-17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    66   3e-11
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151...    38   0.007
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744...    38   0.007
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    36   0.037
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438...    36   0.049
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    32   0.46 
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770...    30   1.9  
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631           29   4.3  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    29   4.3  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   7.5  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 37/51 (72%), Positives = 46/51 (90%)
 Frame = +3

Query: 111 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHA 263
           + +  LVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH++ A
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTA 191



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L LT V++ D+  FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 194 LCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 238


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 36/51 (70%), Positives = 46/51 (90%)
 Frame = +3

Query: 111 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHA 263
           + +  LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH++ A
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTA 176



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/45 (55%), Positives = 39/45 (86%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L LT V++ D+  FSK++EAIK+NFN++++E+RK WGGG++G+KS
Sbjct: 179 LCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKS 223


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L LT V++ D+  FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 164 LCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 208



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +3

Query: 111 EEEGALVVIAHDVDPIELVLFLPALCRKMGV 203
           + +  LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155


>10_01_0125 +
           1509642-1509759,1509847-1509950,1510693-1510824,
           1510936-1510962
          Length = 126

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 52  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88


>03_02_0321 +
           7443835-7443837,7443957-7444077,7444168-7444271,
           7445056-7445187,7445285-7445311
          Length = 128

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 54  VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 108 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 236
           R  +  L +IA ++ PI+++  +P LC +  +PY  V  K  L
Sbjct: 57  RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99


>02_05_0610 -
           30342105-30342266,30343024-30343129,30343788-30343857,
           30343978-30344092
          Length = 150

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 108 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 236
           R     L VIA ++ PI+++  +P LC +  +PY  V  K  L
Sbjct: 57  RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99


>02_01_0014 -
           87215-87280,87358-87495,87593-87721,87801-87869,
           87962-88042,88133-88237,88338-88568,88665-90197,
           90660-90752,91477-92887,93184-93305,93479-93718,
           94521-94682,94770-94937,95025-95141,95266-95376,
           95919-96506
          Length = 1787

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -3

Query: 474 YSAQPCFCANSRALAFSSLA---MRALDLLPRTPPPQCLRSSS*RS-LKFVLMASTTFEK 307
           Y A PCFCA    + +  LA   ++AL  + +  P  CLR+ +  + L ++   ST  ++
Sbjct: 175 YGAIPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQR 234

Query: 306 EARSPDSTFVR 274
            A S  +   R
Sbjct: 235 VALSTAANICR 245


>05_03_0629 +
           16376575-16376689,16376792-16376839,16376927-16377012,
           16377791-16377878,16378387-16378472,16378604-16378690,
           16379111-16379293,16379387-16379470,16379590-16379651,
           16379752-16379827,16379906-16379968,16380060-16380141,
           16380840-16380916,16381502-16381549,16381681-16381743
          Length = 415

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 450 ANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 289
           A + + A SS   R   L  R+PPP  LR +  R  + V  A T  E +A +P+
Sbjct: 8   AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61


>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
          Length = 361

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 453 CANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEK 307
           CA S A+ FS+     ++  PRT   + ++     S  F     T+FEK
Sbjct: 182 CARSEAMIFSANLCARINFAPRTTRDRIIQGPKTISQMFPFFKGTSFEK 230


>03_02_1025 +
           13289146-13289586,13291882-13292087,13292174-13292323,
           13292412-13292545,13292843-13292949,13293031-13293137,
           13293581-13293686,13294098-13294217,13294318-13294474,
           13295163-13295254,13295338-13295582,13295668-13296268,
           13296362-13296457,13296541-13296794,13297622-13297715,
           13299138-13299188
          Length = 986

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 214 LSRASPASVHLYTADMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALR 357
           LSR  P  V  + +D+  + +     + PR +++ R SH + +Q ALR
Sbjct: 433 LSRMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFRSSHPNNIQNALR 480


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 69  HHPIRHKHSHQAGR-EEEGALVVIAHDVDPIEL 164
           HH  R +HSH+AGR    G   V+A    P+ L
Sbjct: 578 HHHDRQQHSHEAGRNHHRGYGEVVAAGAAPLRL 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,399
Number of Sequences: 37544
Number of extensions: 307587
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)