Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0821
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        85   8e-17
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   8e-17
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        43   3e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          38   0.012
SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                28   7.6  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  28   7.6  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 37/52 (71%), Positives = 47/52 (90%)
 Frame = +3

Query: 114 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHAHA 269
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+++A A
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATA 110



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 23/45 (51%), Positives = 36/45 (80%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G KS
Sbjct: 111 LCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKS 155


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 37/52 (71%), Positives = 47/52 (90%)
 Frame = +3

Query: 114 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHAHA 269
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+++A A
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATA 201



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 23/45 (51%), Positives = 36/45 (80%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G KS
Sbjct: 202 LCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKS 246


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           +V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 99  QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 227
           +A R+ E   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = +2

Query: 635 AVKFIMICKVHISFACLCTCVDLCYYK--ITLFYSICVLTSV------GLIYFYKFYL 784
           AVK + +  ++I F   C CV+  Y+   +TL +++  L SV      G+I++ + Y+
Sbjct: 557 AVKLLSLPVLYILFIIFCICVEASYFMLILTLSFNVVFLGSVIGFTIMGIIFYIEVYI 614


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 390 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 283
           R    + +RS S RSL   L  ST+ EKEA+  D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 480 KLYSAQPCFCANSRALAFSSLAMRALDLLPRTPPPQCLRSSS 355
           +L S  PCFCANS     +  + R    L +TP  Q + +SS
Sbjct: 575 QLVSTSPCFCANSSNCQHALSSSRQ---LVKTPSRQLVNASS 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,202,794
Number of Sequences: 59808
Number of extensions: 363148
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)