Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0821
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 68 7e-12
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 68 7e-12
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 40 0.003
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 3.9
Z66520-8|CAE17837.1| 357|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical... 29 5.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 126 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRR 257
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V R+
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRK 198
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +2
Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 406
+AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 203 VALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 248
Score = 35.1 bits (77), Expect = 0.059
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 61 RPNTIRSGTNTVTKLVEKKKA 123
RPNT+R G NT+T+LVE ++A
Sbjct: 133 RPNTVRHGVNTITRLVETRRA 153
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 126 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRR 257
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V R+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRK 178
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +2
Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 406
+AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 183 VALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 228
Score = 35.1 bits (77), Expect = 0.059
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 61 RPNTIRSGTNTVTKLVEKKKA 123
RPNT+R G NT+T+LVE ++A
Sbjct: 113 RPNTVRHGVNTITRLVETRRA 133
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 126 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRR 257
R E + ++A +V PI++ +P +C + +PY + + +LG A+ HRR
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 414 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 265
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 414 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 265
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 414 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 265
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 414 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 265
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 414 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 265
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z66520-8|CAE17837.1| 357|Caenorhabditis elegans Hypothetical
protein F49E12.12 protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 572 TLITRFHITRSIPRITRGYFCAVKFI----MICKVHISFACLCTCVDLCYYKITLFYSIC 739
T + + + R R+ FC F ++CK +ISF C+ + + IC
Sbjct: 226 TYLESYDVNRKNSRVLERVFCIALFAFCLPVVCKDYISFLYTYPCLYHTEWPAAICEYIC 285
Query: 740 VLTSVGLIYFY 772
++T +I FY
Sbjct: 286 IIT---IIVFY 293
>AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical
protein Y102A5C.23 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 650 MICKVHISFACLCTCVDLCYYKITLFYSICVLTSV 754
M+ ++ F C V C+Y +LF S+C++T V
Sbjct: 70 MVIIYYLIFVLTCISVFFCFY--SLFSSLCIITQV 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,959
Number of Sequences: 27780
Number of extensions: 269674
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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