Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0821
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    87   1e-17
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            87   2e-17
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    40   0.001
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    38   0.006
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    38   0.006
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    38   0.006
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    38   0.008
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    28   8.3  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 40/53 (75%), Positives = 47/53 (88%)
 Frame = +3

Query: 111 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHAHA 269
           + +  LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH++ A A
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAA 191



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 27/45 (60%), Positives = 37/45 (82%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L LT V++ D+  FSK++EAIK NFN++YEE RK WGGG++G+KS
Sbjct: 192 LCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKS 236


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 46/51 (90%)
 Frame = +3

Query: 111 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRRHA 263
           + +  LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH++ A
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTA 190



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 27/45 (60%), Positives = 37/45 (82%)
 Frame = +2

Query: 269 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 403
           L LT V++ D+  FSK++EAIK NFN++YEE RK WGGG++G+KS
Sbjct: 193 LCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKS 237


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 108 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 236
           R  +  L VIA ++ PI+++  LP LC + GVPY  V  K  L
Sbjct: 63  RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 86  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           VV+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 239
           +V+A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 54  IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 117 LLLDQLGDCVCAGSDGVGPLWWRLI 43
           +LLDQ  D  C G  G GP W  ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,189
Number of Sequences: 28952
Number of extensions: 243402
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)