Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0819
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    26   0.41 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   6.7  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 319 VPQGCLFASSHFLPS-C-ICELHYVW*ECNLTSI 224
           VP G ++   ++L   C ICELH ++  CN+ ++
Sbjct: 98  VPSGVVYKIGYWLHQICHICELHTIFLVCNVLTV 131


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 498 VLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVN 382
           VL+   F + +CS+ ++   +   FP+     D    +N
Sbjct: 342 VLNMEHFFSVKCSIQSESLLNDILFPVAGFISDFDCDIN 380


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 IRSRLIFD-ILDIGREDSYFEVSRASDEQNVIGMPINRCHSRTNGLLNMLR 570
           ++  LIF  +L + R+ SY +   A  E+ +  + +++C +   G+L  ++
Sbjct: 169 VKEHLIFQALLRMDRDISYSQ-RMARVEEVISDLALSKCQNTPIGILGRIK 218


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 IRSRLIFD-ILDIGREDSYFEVSRASDEQNVIGMPINRCHSRTNGLLNMLR 570
           ++  LIF  +L + R+ SY +   A  E+ +  + +++C +   G+L  ++
Sbjct: 169 VKEHLIFQALLRMDRDISYSQ-RMARVEEVISDLALSKCQNTPIGILGRIK 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,224
Number of Sequences: 336
Number of extensions: 4481
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)