Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0819
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 136 3e-33
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 53 4e-08
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 38 0.002
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 34 0.028
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.064
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 32 0.085
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.26
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.26
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.34
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.34
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 30 0.45
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.45
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.45
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.60
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.79
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 1.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 1.0
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 1.0
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 1.4
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.4
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.4
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 28 1.8
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.8
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.4
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 27 2.4
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 3.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.2
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 3.2
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.6
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 5.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 7.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.4
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 7.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 7.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 9.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.7
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 9.7
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 136 bits (330), Expect = 3e-33
Identities = 53/91 (58%), Positives = 74/91 (81%)
Frame = +3
Query: 495 EQVCCGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRV 674
++ GSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHPNN+LL AG AD K V
Sbjct: 113 DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Query: 675 FSAYIKDIEDQPGPNVWGSKLPLGQLLAEFP 767
SAY++D++ +P +VWGS+LP + AE+P
Sbjct: 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203
Score = 118 bits (284), Expect = 1e-27
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +1
Query: 247 TKHNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 426
T N+V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG
Sbjct: 30 TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89
Query: 427 WATTLVLLRINRAATCVKWSPMENKFAAG 513
W TLVLLR+NRAAT V+WSP E+KFA G
Sbjct: 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVG 118
Score = 35.9 bits (79), Expect = 0.007
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +1
Query: 205 MSCMEQG*KSNCILT--KHNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 375
++C++ KSN I+T + ++Y+K + WKQT L+ + + W+PN ++
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 376 CSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPMENKFAAG 513
S R V + W + L R + + W P AAG
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 271 YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSVDRNAYV 402
Y ++ NDW + +L + LR ++ +DW PN + DR AYV
Sbjct: 128 YFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 543 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 677
+E++ N W VT +DW P + +V S D V+
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 262 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W +D ++
Sbjct: 358 VSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLA 417
Query: 442 VLLRINRAATCVKWSPMENKFAAG 513
VL + V W P E+ +G
Sbjct: 418 VLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +1
Query: 256 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 435
N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 445 NSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDVA 504
Query: 436 TLVLLRINRAATCVKW 483
T+ I R A +W
Sbjct: 505 TIDSTNILRPALQEEW 520
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 486
L EH V + W P + +V+ S D + W GDD WA T L + +S
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFS 476
Query: 487 PMENKFAA 510
P N A+
Sbjct: 477 PNGNTLAS 484
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSAD 659
V + WHP LLV+GS D
Sbjct: 426 VKVVTWHPTEDLLVSGSYD 444
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 286 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 450
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 451 RINRAATCVKWSPMENKFA 507
+ A V WS N A
Sbjct: 253 KFPDIAWRVSWSLSGNILA 271
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWTQGDDGKWAT 435
V ++++ G W + + H V + WAP+ ++ C S D V DDG
Sbjct: 79 VIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGS-CD 137
Query: 436 TLVLLRINRAATCVKWSP 489
T + V WSP
Sbjct: 138 TRIFTAHEPGCNAVCWSP 155
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 33.9 bits (74), Expect = 0.028
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 307 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 571 NLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 307 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 453
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.064
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 438
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVF 677
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 268 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 429
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 250 KHNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 420
+H + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 556 EHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 489
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
Query: 490 MENKFAAGQEL 522
+ +L
Sbjct: 275 ANQQSRGSNQL 285
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 420
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.26
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +1
Query: 262 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 442 VLLRINRAATCVKWSPME 495
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.34
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 408
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVFS 680
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.34
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +1
Query: 274 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = +1
Query: 259 EVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 438
+V+++ E N+++ N +H +P+ I SVD VW D K +
Sbjct: 82 DVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISE- 140
Query: 439 LVLLRINRAATCVKWSPMENKFAAGQE 519
L + C+ +SP +G +
Sbjct: 141 --LDTKGKFGLCIDYSPNGRFIVSGHQ 165
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 268 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 283 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINR 462
G ++ +L H V + ++PN R + D YV+ DGK + + ++
Sbjct: 176 GTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF----DGKTGDQVYEIDAHK 231
Query: 463 AAT-CVKWSPMENKF 504
+ + WSP ++F
Sbjct: 232 GSIFSISWSPDSSQF 246
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 256 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
++V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 52 SKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
K+ L+ H V I W+P+ +++CS D++ +W
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 408
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +1
Query: 286 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA 465
N+ Q ++L+ H V G+ +P I++CS D +W++ D K +T + N
Sbjct: 391 NEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK--DTK-STIVKYAGHNAP 447
Query: 466 ATCVKWSPMENKFA 507
V++SP FA
Sbjct: 448 IWDVQFSPFGYYFA 461
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = +1
Query: 352 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRA-----ATCVKWSPMEN-KFAA 510
P +N IVTCS D ++W + + T+ L +++ + ATC+ + P N +F
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLV 362
Query: 511 GQE 519
G E
Sbjct: 363 GAE 365
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVR 671
V ++DWHP+ LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 238 CILTKHNEVHIYKKEGNDWKQTNNLVEHDLRVM---GIDWAPNTNRIVTCSVDRNAYVW 405
C++T N+VH+ W+ TN + ++ + + N I + S + YVW
Sbjct: 115 CVVTSKNQVHLLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYIASASAFQQIYVW 173
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 444 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 334
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVFS 680
V+SID++P LLV+GS D VR+++
Sbjct: 141 VSSIDFNPLGTLLVSGSWDETVRIWN 166
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 471 LREMVSHGEQVCCGSGARLISICYFEKENNWWVSKHIKKP 590
LRE+V E++ CGS A + K +NW +S H++ P
Sbjct: 196 LREIVETCEKIYCGSFAVEFTHISSRKRSNWILS-HLETP 234
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 340 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWS 486
+DW+ N N +V +++RN YVW D G + L + VKWS
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWS 230
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 474 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 313
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 408
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 525 LISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIED 704
LIS+ FE++ + ++ +R S + P +LLVAG D +V Y+K++++
Sbjct: 229 LISVNRFERKKDIRLAIDAFSALRDL--SANRFPEYLLLVAGGYDIRVSENRRYLKELQE 286
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 256 NEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 357
N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 582 KKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 677
K P +V + WHPN +L G D +V+
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +3
Query: 561 WWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAY 686
+W K + + + S + + W ++ L+AG+ D +R++ A+
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAH 158
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 507 CGSGARLISICYFEKENNWWVS 572
CGSG L IC+ E +W VS
Sbjct: 152 CGSGRDLAWICFRESGKHWMVS 173
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVFS 680
V I +HP L V+G D+KV V++
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWN 81
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 26.2 bits (55), Expect = 5.6
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 100 VVSPQLLQFHKNSGI*SEIENGTNVN-FW*LMRADNMSCMEQG*KSNCILTKHNEVHI-- 270
+ P L KN I +++ G N+N + +A +QG K + I T HI
Sbjct: 98 IAIPHLSLEDKNEDIWTKVV-GINLNGAYYTAQAAGHHFKKQG-KGSLIFTASMSGHIAN 155
Query: 271 YKKEGNDWKQTNNLVEHDLRVMGIDWAP 354
+ ++ + T V+H R + ++WAP
Sbjct: 156 WPQQWASYHATKAAVKHLARALAVEWAP 183
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 405 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 292
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 579 IKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 680
+K I + VT+I PN+ + GS D +RV+S
Sbjct: 438 LKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWS 471
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 313 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 447
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 540 YFEKENNWWVSKHIKKPIRSTVTSID 617
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 630 YWDANQ*MSQSNEWA 586
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 495
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 496 NKFAA 510
A
Sbjct: 304 RGILA 308
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSAD 659
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 722 HIRSRLIFDILDIGREDSYFEVSRASDEQNVIGMP 618
H++ RLIFD++ + + V++A+ V+G P
Sbjct: 649 HLQERLIFDLMALPNQAWENIVAQAAQNAQVLGDP 683
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +3
Query: 594 RSTVTSIDWHPN--NILLVAGSADFKVRVFSAYIK-DIEDQ 707
R+ + SI+WHPN +++ V G AD ++ ++ ++ D E+Q
Sbjct: 387 RAPIYSIEWHPNEDSVIGVVG-ADNQISLWDLSVELDEEEQ 426
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -2
Query: 396 SITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLPVISF----LLVYVNFIMFGENAI*L 229
+I ++T N V V I KV+ ++ LL + S L+ ++NF + I
Sbjct: 109 NILQDKTSVN-VNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILS 167
Query: 228 LSLFHA*HVIGAH 190
SLFH H+I H
Sbjct: 168 HSLFHISHLISFH 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,434
Number of Sequences: 5004
Number of extensions: 75121
Number of successful extensions: 302
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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