Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0819
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 105 5e-23
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 105 5e-23
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 105 5e-23
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 9e-04
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 41 0.001
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.014
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.024
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 35 0.074
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 34 0.13
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 34 0.13
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.17
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 33 0.17
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 33 0.23
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 33 0.30
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 33 0.30
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 33 0.30
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 0.69
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 0.69
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.69
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.69
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.91
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.91
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.91
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.91
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 31 1.2
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 1.2
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 30 1.6
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 2.1
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 30 2.1
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 2.8
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 29 2.8
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.8
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 3.7
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 3.7
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.7
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 4.9
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 4.9
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 4.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 28 6.4
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 28 6.4
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi... 28 8.5
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 105 bits (251), Expect = 5e-23
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 HNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 429
+ EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 430 ATTLVLLRINRAATCVKWSPMENKFAAG 513
TLV+LR+NRAA CV+WSP ENKFA G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 94.3 bits (224), Expect = 9e-20
Identities = 43/100 (43%), Positives = 61/100 (61%)
Frame = +3
Query: 510 GSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYI 689
GSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS +I
Sbjct: 117 GSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFI 176
Query: 690 KDIEDQPGPNVWGSKLPLGQLLAEFPIRLQVAVGSTAFPS 809
K ++ + ++ G+ + + + A G PS
Sbjct: 177 KGVDTKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPS 216
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 200 ITCHAWNKDRSQIAFSPN 253
ITCHAW+ D S +A PN
Sbjct: 13 ITCHAWSPDLSMVALCPN 30
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 271 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 408
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 105 bits (251), Expect = 5e-23
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 HNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 429
+ EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 430 ATTLVLLRINRAATCVKWSPMENKFAAG 513
TLV+LR+NRAA CV+WSP ENKFA G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 95.1 bits (226), Expect = 5e-20
Identities = 45/100 (45%), Positives = 62/100 (62%)
Frame = +3
Query: 510 GSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYI 689
GSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS +I
Sbjct: 117 GSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFI 176
Query: 690 KDIEDQPGPNVWGSKLPLGQLLAEFPIRLQVAVGSTAFPS 809
K ++ + + G+ L Q + + + A G PS
Sbjct: 177 KGVDTKYAHYLNGAFFLLKQQILQLDLSYSWAFGVKWSPS 216
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 200 ITCHAWNKDRSQIAFSPN 253
ITCHAW+ D S +A PN
Sbjct: 13 ITCHAWSPDLSMVALCPN 30
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Frame = +1
Query: 271 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWATTL 441
Y++E N W H+ V + W PN + T S D V++ +G D K+A L
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYAHYL 187
Query: 442 ---------VLLRINRA---ATCVKWSPMENKFA 507
+L+++ + A VKWSP N A
Sbjct: 188 NGAFFLLKQQILQLDLSYSWAFGVKWSPSGNTLA 221
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 105 bits (251), Expect = 5e-23
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 HNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 429
+ EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 430 ATTLVLLRINRAATCVKWSPMENKFAAG 513
TLV+LR+NRAA CV+WSP ENKFA G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 94.3 bits (224), Expect = 9e-20
Identities = 43/100 (43%), Positives = 61/100 (61%)
Frame = +3
Query: 510 GSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYI 689
GSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS +I
Sbjct: 117 GSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFI 176
Query: 690 KDIEDQPGPNVWGSKLPLGQLLAEFPIRLQVAVGSTAFPS 809
K ++ + ++ G+ + + + A G PS
Sbjct: 177 KGVDTKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPS 216
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 200 ITCHAWNKDRSQIAFSPN 253
ITCHAW+ D S +A PN
Sbjct: 13 ITCHAWSPDLSMVALCPN 30
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 271 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 408
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 9e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 277 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 444
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 445 LLRINRAATCVKWSP 489
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 277 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 447
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 534 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPN--NILLVAGSADFKVRVFSA 683
I + E N W H+ + +V SI W P+ + L G++D + VFSA
Sbjct: 83 ILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSA 134
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Frame = +1
Query: 262 VHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQGDDG 423
V ++K WK L +H V + WAPN + I + S D +WT G +G
Sbjct: 188 VKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIGKEG 247
Query: 424 KWATTLVLLRINRAATCVKWSPMENKFA 507
+ VL V WS N A
Sbjct: 248 EQWEGTVLKDFKTPVWRVSWSLTGNLLA 275
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 310 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 483
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 484 SPME 495
+P E
Sbjct: 112 APHE 115
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +1
Query: 268 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 447
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 448 LRINRAATCVKWSP 489
+ V+W P
Sbjct: 160 TGHTQDVKMVQWHP 173
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 280 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 456
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 457 NRAATCVKWSPMENKFAAGQEL 522
N + WS N AAG ++
Sbjct: 209 NNGHSSTVWSISFN--AAGDKM 228
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 277 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 444
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 445 LLRINRAATCVKWSP 489
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 534 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI--LLVAGSADFKVRVFSA 683
I + E N W H+ +S+V SI W P++I L GS+D + VF+A
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTA 134
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 NEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQGD 417
N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 186 NTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVGK 245
Query: 418 DGKWATTLVLLRINRAATCVKWSPMENKFA 507
+G+ VL V WS N A
Sbjct: 246 EGEQWEGKVLKDFMTPVWRVSWSLTGNLLA 275
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 468
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 469 TCVKWSP 489
+ W+P
Sbjct: 107 NSIAWAP 113
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 277 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 429
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.014
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 423
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 253 HNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
+ E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +1
Query: 322 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENK 501
DL+V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQS 59
Query: 502 FAAG 513
A G
Sbjct: 60 VACG 63
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 34.7 bits (76), Expect = 0.074
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 268 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 444
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 445 LLRINRAATCVKWSPMENKFAAGQEL 522
L +N + WS N AAG ++
Sbjct: 181 LSELNNGHSSTVWSISFN--AAGDKM 204
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 268 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 441
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 442 VLLRINRAATCVKWSP 489
VL + V W P
Sbjct: 134 VLTGHSEDVKMVLWHP 149
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 411
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 498
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 499 KFAAG 513
A G
Sbjct: 121 SVACG 125
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 498
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 499 KFAAG 513
A G
Sbjct: 121 SVACG 125
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 447
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 498
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLDR 754
Query: 499 KFAAG 513
+G
Sbjct: 755 NEKSG 759
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Frame = +1
Query: 232 SNCILTKHNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT- 408
S+C + I+ E WK L H L V ++++ + +++ S DR+ V++
Sbjct: 617 SSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSI 676
Query: 409 -QGDDGKWATTLV--LLRINRAATCVKWSPMENKFA 507
+ D+G+ + L+ + R W+P ++FA
Sbjct: 677 QRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQFA 712
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 549 KENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVW 725
KE+ W + + + VT + W L++ S D RVFSA+ D ++ W
Sbjct: 400 KESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKNDEGNEAEDEHW 458
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +1
Query: 289 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 468
+WK L H V+ ++W+P+ + + + S+D ++W T VL
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTG---MCTTVLRGHLSLV 163
Query: 469 TCVKWSPMENKFAAGQELD 525
V W P+ F A Q D
Sbjct: 164 KGVTWDPI-GSFIASQSDD 181
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Frame = +1
Query: 256 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD------ 417
N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 140 NTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHR 197
Query: 418 -DGKWATTL 441
DG WA +L
Sbjct: 198 TDGHWAKSL 206
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 444
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 445 LLRINRAATCVKWSPMENKFAAGQELD 525
L V W P+ K+ A D
Sbjct: 91 LDAHCHYVQGVAWDPLA-KYVASLSSD 116
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 444
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 445 LLRINRAATCVKWSPMENKFAAGQELD 525
L V W P+ K+ A D
Sbjct: 150 LDAHCHYVQGVAWDPLA-KYVASLSSD 175
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 444
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 445 LLRINRAATCVKWSPMENKFAAGQELD 525
L V W P+ K+ A D
Sbjct: 150 LDAHCHYVQGVAWDPLA-KYVASLSSD 175
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 728
+ S+D+HP+ LL GSAD V+ + ++ GP G
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAG 229
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWG 728
+ S+D+HP+ LL GSAD V+ + ++ GP G
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAG 229
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +1
Query: 304 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 483
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 484 SPMENKFAAGQELD 525
P NK+ LD
Sbjct: 318 HP-TNKYFVSASLD 330
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +1
Query: 304 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 483
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 484 SPMENKFAAGQELD 525
P NK+ LD
Sbjct: 318 HP-TNKYFVSASLD 330
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 474
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 475 VKWSPMENKFAAGQELD 525
V+++P+++ +D
Sbjct: 402 VQFNPVDDDHFISGSID 418
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 474
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 475 VKWSPMENKFAAGQELD 525
V+++P+++ +D
Sbjct: 402 VQFNPVDDDHFISGSID 418
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVF 677
V S+DWHP LLV+G D V+++
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLW 295
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 283 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 420
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 310 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 489
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 490 MENK 501
+ K
Sbjct: 280 DDTK 283
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 304 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 483
+ L H +V I + +T+ ++T S D+ +W +DG + T+ L+ + A
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNY-TSRHTLKDHSAEVRAVT 316
Query: 484 SPMENKFAAGQELD 525
NK+ LD
Sbjct: 317 VHATNKYFVSASLD 330
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 474
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 475 VKWSPM-ENKFAAG 513
+++SP+ EN F +G
Sbjct: 552 IQFSPVDENYFLSG 565
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 537 CYFEKENNWWVSKHIKKPIR---STVTSIDWHPNNILLVAGSADFKVRVF 677
C ++ W I+ P+R ++ +DWHPN + GS+D VR++
Sbjct: 478 CSHDRTARIWSMDRIQ-PLRIMAGHLSDVDWHPNCNYIATGSSDKTVRLW 526
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 340 IDWAPNTNRIVTCSVDRNAYVW 405
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 579 IKKPIRSTVTSIDWHPN-NILLVAGSADFKVRVF 677
++K + + +DW+P+ N L++ GSAD VRVF
Sbjct: 321 VEKAHDADLHCVDWNPHDNNLILTGSADNTVRVF 354
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNR-IVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 486
HD + +DW P+ N I+T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 487 P 489
P
Sbjct: 385 P 385
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 576 HIKKPIRSTVTSIDWHPNNILLVAGSADFKVR 671
H K + S+D+HP+ LL GSAD V+
Sbjct: 272 HEFKSHEGKIQSLDFHPHEFLLATGSADKTVK 303
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 603 VTSIDWHPNNILLVAGSADFKVRVF----SAYIKDIEDQPGPNVWGSKL-PLGQLLA 758
V ++ HP+ I+ + S D VRVF +A I +E P VWG + P G +LA
Sbjct: 63 VAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPS-EVWGMQFEPKGTILA 118
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 316 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 441
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 298 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 474
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 475 VKWSP 489
+ WSP
Sbjct: 325 ILWSP 329
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 295 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 423
K L EH + I ++P+ R+ T S D+ VW + G
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKG 726
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = +3
Query: 414 R*WEMGNYSCSSAYQPSSDLREMVSHGEQVCCGSGARLISICYFEKENNWWVSKHIKKPI 593
R W + N SC+ Y+ S + S A L+++ E + +H +
Sbjct: 762 RYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQ----AIRHSLQGH 817
Query: 594 RSTVTSIDWHPNNILLVAGSADFKVRVFS 680
+ + S+ W P+ L + S D V+V++
Sbjct: 818 ANPINSVCWDPSGDFLASVSEDM-VKVWT 845
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 268 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 405
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 489
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 490 ME-NKFAAG 513
+ N A G
Sbjct: 325 FQANLLATG 333
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 319 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 489
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 490 ME-NKFAAG 513
+ N A G
Sbjct: 315 FQANLLATG 323
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 594 RSTVTSIDWHPNNILLVAGSADFKVRVF 677
R +V + +HP+ LL GSAD ++R++
Sbjct: 17 RHSVMDVSFHPSKSLLFTGSADGELRIW 44
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = +1
Query: 304 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 483
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 484 SPMENKFAA 510
SP ++ A
Sbjct: 349 SPHQSSLLA 357
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 532 QFAILRRKIIGGCLSILRSPFVRL*HLLIGIPITFCSSLALLTSKYESSLPISRI 696
+F L++ I+ GC S++ PF+ L + + CSSL L S +++ + +
Sbjct: 780 KFTNLKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNL 834
>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 657
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 687 IKDIEDQPGPNVWGSKL 737
++D+ +PGP VWGS L
Sbjct: 445 VQDMRTEPGPKVWGSLL 461
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,393
Number of Sequences: 28952
Number of extensions: 397169
Number of successful extensions: 1208
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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