Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0818
         (363 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XY09 Cluster: Putative uncharacterized protein; n=2; ...    32   3.6  
UniRef50_Q30Q96 Cluster: Sensor protein; n=1; Thiomicrospira den...    31   8.3  

>UniRef50_Q4XY09 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 598

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 217 NYNAVHPTCYFYNFKKSSVLLFRLIKVVKIIIIN 116
           N N ++P  Y YNFKK ++  F++I     I+IN
Sbjct: 219 NENCINPNNYIYNFKKKNI-KFKIINHTSDILIN 251


>UniRef50_Q30Q96 Cluster: Sensor protein; n=1; Thiomicrospira
           denitrificans ATCC 33889|Rep: Sensor protein -
           Thiomicrospira denitrificans (strain ATCC 33889 / DSM
           1351)
          Length = 464

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 250 LINSIITITCLNYNAVHPTCYFYNFKKSSVLLFRLIK 140
           + N +  I+  NY A+  T YFY F + S+LL  L+K
Sbjct: 191 ITNYLDEISNKNYKAIIKTKYFYEFLQISLLLKNLVK 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,740,914
Number of Sequences: 1657284
Number of extensions: 3743056
Number of successful extensions: 7587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7582
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)