Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0818
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    28   0.51 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    24   8.3  

>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 74  ESFKTLQCLVFLLMIYDYYFYH 139
           ESF  LQ L F+L+IY  + YH
Sbjct: 293 ESFHLLQFLGFVLLIYGIFTYH 314


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  YKESFKTLQCLVFLLMIYDYYFYHLN 145
           YKE+F  L+CL ++  +++     LN
Sbjct: 488 YKEAFNELRCLSYVQCLFENITSSLN 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,743
Number of Sequences: 5004
Number of extensions: 17958
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)