Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0818
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912...    29   1.5  
10_06_0164 + 11364436-11367280,11367357-11367715                       27   4.5  
12_02_1064 - 25771870-25772102,25772222-25772375,25772487-257725...    27   6.0  
01_06_0531 + 30041486-30041770,30042029-30042964                       26   7.9  

>08_01_0927 -
           9123473-9123589,9124534-9124616,9125177-9125252,
           9125641-9125740,9125996-9126064,9126122-9126207,
           9126293-9126430,9126688-9126810,9128130-9129719,
           9129929-9130402
          Length = 951

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  KQRYNNSVYKESFKTLQCLVFLLMIYDYYFY 136
           K     S+YK  F ++ CL  L+MI+ Y+ Y
Sbjct: 784 KAAAKRSLYKAIFGSVSCLDSLMMIHQYFCY 814


>10_06_0164 + 11364436-11367280,11367357-11367715
          Length = 1067

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 268 ILQKNSLINSIITITCLNYNAVHPTCYFYNFKKSSVLL 155
           ++Q+ S+ + I       +N+ HPT    +FK S++LL
Sbjct: 868 LVQRLSIASDIAAALDYLHNSCHPTIVHCDFKPSNILL 905


>12_02_1064 -
           25771870-25772102,25772222-25772375,25772487-25772569,
           25772669-25772762,25773647-25773799,25774388-25774510
          Length = 279

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 211 NAVHPTCYFYNFKKSSVLL-FRLIKVVKIIIINH 113
           N +HP   F   +KSS+LL + +  V  I++I H
Sbjct: 119 NVIHPETTFSKVQKSSLLLAYEVNAVGPILVIKH 152


>01_06_0531 + 30041486-30041770,30042029-30042964
          Length = 406

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 268 ILQKNSLINSIITITCLNYNAVHPTCYFYNFKK 170
           I  ++  I ++ T   +  + +HP  Y+Y FKK
Sbjct: 210 ITSRSDKIENLGTAAAIRLDLLHPEAYWYFFKK 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,013,559
Number of Sequences: 37544
Number of extensions: 76007
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)