Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0818
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a prote...    27   5.3  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    26   9.3  

>AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a protein
           protein 214 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 68  YKESFKTLQCLVFLLMIYDYYFYHLN 145
           Y++  K  +C       YDY +YHLN
Sbjct: 24  YQKFCKVFECETMDYREYDYLYYHLN 49


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 62  SVYKESFKTLQCLVFLLMIYDYYFYHLN*SK*EDAR--LFEVVKIACRMNSV 211
           S+Y         LV  L+++ +Y Y  N ++ +D +  +F ++    +MN V
Sbjct: 15  SIYLYFISVFVFLVIYLILFPFYMYVFNYNRKQDEKTFMFPIIDHIFKMNKV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,208,038
Number of Sequences: 27780
Number of extensions: 95484
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)