Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0816
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   1.9  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   3.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.7  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 389 GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 285
           G R       +GD  G  S VD QN+  E S   N
Sbjct: 74  GKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNEN 108


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 123 YRCRTCHHR*VRAHFRRT 176
           + C+ CH R  R H  +T
Sbjct: 10  FECQECHKRFTRDHHLKT 27


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 123 YRCRTCHHR*VRAHFRRT 176
           + C+ CH R  R H  +T
Sbjct: 163 FECQECHKRFTRDHHLKT 180


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 152 SSMMAGPTAIGTKSSMMGAG 93
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 152 SSMMAGPTAIGTKSSMMGAG 93
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,695
Number of Sequences: 336
Number of extensions: 1686
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)