Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0816
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 29 0.28
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 29 0.48
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.5
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 27 1.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 1.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 2.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.4
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 5.9
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 5.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 5.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.5 bits (63), Expect = 0.28
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 263 YDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 84
+ S P+ +G+N + P GSN T A + + +S +G +SM P T
Sbjct: 136 FPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLT 195
Query: 83 P 81
P
Sbjct: 196 P 196
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.48
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 314 DLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 213
+L + A+S G RV++D+G T+I + S+T+ G
Sbjct: 153 ELLQAQAMSLGLCARVIHDAGRTQIASGSATVLG 186
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 380 DNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEI 240
D G DT G N +D D++E S G KR++ Y++GP +
Sbjct: 448 DEGDDTLYGTNDAE---MDDMLDIYETDE-SVGSKRKIAYENGPLRL 490
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 359 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 213
+G+ R ++D+ DL+E K ++ P E TNS+T G
Sbjct: 252 AGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNSNTWYG 300
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 1.9
Identities = 32/135 (23%), Positives = 58/135 (42%)
Frame = -1
Query: 476 SATWTGSGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERS 297
+ T TG+GTG F +N+ + G G G TG+G G ++ N ++ +
Sbjct: 343 NTTNTGTGTGLFGSNNATNTGTG---QTTGGLFGGAATGTGTGFGSSTGGFGSNTNNQPN 399
Query: 296 AVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGT 117
+ + G ++ G N++T T G+NS + G+N++ P+ G
Sbjct: 400 SGTMG---TGLFGFGANNNTANNNTAPTSTFGGNNSSNFS----FGANNNAATKPSGFGF 452
Query: 116 KSSMMGAGPATPGLT 72
S+ PA+ G +
Sbjct: 453 GSTT--TTPASGGFS 465
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 261 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 362
V PP+APVA P V + AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 258 IVDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 365
+V P P + P+V + ++ Q + P+VP G
Sbjct: 657 VVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 261 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 362
V PP+APVA P V AP VP P
Sbjct: 574 VPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP 607
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 323 VQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSST 222
+ N+L RS+ +GGK R+ DS +SS+
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSEDTYPPHSSS 36
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 2.6
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -1
Query: 455 GTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRA-SLVDVQNDLHERSAVSNGG 279
G+ +NN+ SN + N+N G + S +G A S ++ + + +N
Sbjct: 558 GSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNN 617
Query: 278 KRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMA 177
+ ++ N+S+ G ++ GS L A
Sbjct: 618 NQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQA 651
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 84
S PT + SST++ + S+ + + M S+SS + PT+ + S + P++
Sbjct: 298 SSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 204 DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAGDSNG-HHGS 28
+R ++ S+ N + + +G+ + R D S N+ + A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551
Query: 27 EGQE 16
+ ++
Sbjct: 1552 DSRD 1555
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 165 NGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAG 52
+G E +DG + + D +R GN T++A + G
Sbjct: 220 SGREWFWDGENAESDSSLNGDNTRGGNISTNRAFNNMG 257
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 156 ELIYDGRSDSDRYKVVDDGSR 94
EL+Y D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 401 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 285
ND D D GS + RASL QN +S N
Sbjct: 18 NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = -3
Query: 135 SDSDRYKVVDDGSRSGNAGTHQALSRAGDSNGHHGSEGQEEFHSF 1
++ Y +D S + G H ++ + E +EEFH F
Sbjct: 160 TEDPSYGHSEDSEVSDDTGDHGSVDELESEREGNSGEEEEEFHGF 204
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAI 123
S P TNSST+ PT S T++ T +++S + PT +
Sbjct: 612 SEPNSDLTNSSTLLSPTSTSFTSYTVSA-TATPTSTSHIPIPTVL 655
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -3
Query: 234 ELVDDGRPNGDRFEFVDNGRSDGNGLELIYDGRSDSDRYKVV 109
E DD N D G+ + N E D SD DR + +
Sbjct: 163 EYADDVSDNTDEERTESKGQQESNSAEEYDDDDSDEDRMEEI 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,984
Number of Sequences: 5004
Number of extensions: 28683
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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