Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0816
(476 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 0.32
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 0.73
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 24 0.96
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 21 5.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 5.1
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 21 9.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.0
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 9.0
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 25.4 bits (53), Expect = 0.32
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 458 SGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASL 330
+ T +NN+ +N+ N+N+G DNG G+ +N +
Sbjct: 233 ANTNASNNNNNNNNNN---NNNNGANDNGNGNGASNNNNNGDM 272
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 24.2 bits (50), Expect = 0.73
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 278 KRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMA-GPTAIGTKSSMM 102
+RR+ D E+G + G S AG T+ + +++ G T +S
Sbjct: 179 ERRLRPDEIKVEVGEDEFANGGAARDESK----AGSTDASTPATVTTTGATTTLPAASAT 234
Query: 101 GAGPATP 81
G GPATP
Sbjct: 235 GTGPATP 241
Score = 21.0 bits (42), Expect = 6.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 264 DNPPLAPVADST 299
D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.8 bits (49), Expect = 0.96
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 132 RTCHHR*VRAHFRRTCHCQR 191
R HH AH RRT H R
Sbjct: 149 RCLHHDIENAHIRRTLHMNR 168
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 2.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 437 NNHGLSNDFGFVNDNHGLRDNGIDT 363
NN+ LSN++ + N+N+ +N +T
Sbjct: 84 NNNSLSNNYNY-NNNYNNYNNNYNT 107
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 249 NGDRYELVDDGRPNGDRFEFVDNG 178
+G++ +LV GD +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 152 SSMMAGPTAIGTKSSMM 102
+S +AG AIGT + MM
Sbjct: 275 NSTLAGGVAIGTAAGMM 291
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 5.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 404 VNDNHGLRDNGIDTGSGDN 348
VN +HG++ +G + GD+
Sbjct: 693 VNQSHGIKRSGSHSWEGDS 711
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = +3
Query: 123 YRCRTCHHR*VRAHFRRT 176
+ C CH R R H +T
Sbjct: 10 FECPECHKRFTRDHHLKT 27
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.6 bits (41), Expect = 9.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 97 APIIDDFVPIAVGPAIIDEFEPISV 171
A I+ F+ + PA+ D +PI +
Sbjct: 496 ASIVGTFIILCEAPALRDNTKPIDM 520
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 20.6 bits (41), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 116 KSSMMGAGPATPGLTRP 66
K S G PA+PG +P
Sbjct: 103 KMSTRGKRPASPGYVQP 119
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,907
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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