Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0816
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 32 0.17
At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7) ide... 31 0.31
At4g39380.1 68417.m05574 expressed protein 31 0.40
At1g70740.1 68414.m08154 protein kinase family protein contains ... 31 0.53
At3g28790.1 68416.m03593 expressed protein 30 0.70
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 29 1.6
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 29 2.2
At3g29080.1 68416.m03641 hypothetical protein 29 2.2
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 29 2.2
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 29 2.2
At3g18810.1 68416.m02389 protein kinase family protein contains ... 28 2.8
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 28 2.8
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 28 2.8
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 28 3.8
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 28 3.8
At3g50690.1 68416.m05546 leucine-rich repeat family protein 28 3.8
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 3.8
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 3.8
At5g23490.1 68418.m02756 expressed protein 27 6.6
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 27 6.6
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr... 27 6.6
At2g22080.1 68415.m02622 expressed protein 27 6.6
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 27 6.6
At1g08340.1 68414.m00922 rac GTPase activating protein, putative... 27 6.6
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 27 8.7
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 27 8.7
At2g11005.1 68415.m01177 glycine-rich protein 27 8.7
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 32.3 bits (70), Expect = 0.17
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -1
Query: 371 IDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSN 192
+ + +++ L D+ +D E S GG RR V ++ E GT SS A P + G +
Sbjct: 107 VSANTSNSKTVLQLEDIYDDATESSF--GGGVRRSVVNANGFE-GT-SSFSALPLQPGPD 162
Query: 191 --SLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 81
L M+GP E G+ S + P ++S+ G + P
Sbjct: 163 RSGLFMSGPIERGATSGPLDPPAGEISRSNSAGVHFSAP 201
>At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7)
identical to pseudo-response regulator 7 GI:10281004
from [Arabidopsis thaliana]
Length = 727
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -1
Query: 476 SATWTGSGT-GPFDNNHGL-SNDFGFVNDN-HGLRDNGIDTGSGDNRGRASLVDVQNDLH 306
S + +G G+ GP+ +++G+ + +DN G NG +GSG G +L D +N +
Sbjct: 609 SVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLAD-ENKIS 667
Query: 305 ERSA 294
+R A
Sbjct: 668 QREA 671
>At4g39380.1 68417.m05574 expressed protein
Length = 518
Score = 31.1 bits (67), Expect = 0.40
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -3
Query: 213 PNGDRFEFVDNGRSDGNGLELIY--DGRSDSDRYKVVDDGSRSGNAGTHQALSRAGDSN 43
P+ + E +N +DG+G L++ DG + ++ + S GN G H S AG++N
Sbjct: 238 PHDGQVESTENKINDGSGPTLLFWDDGLTSLSIGGLLSEVSLKGNFGNHCKNSNAGNAN 296
>At1g70740.1 68414.m08154 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 425
Score = 30.7 bits (66), Expect = 0.53
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 278 KRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSS 108
+RR SG +GT S+T + GSN T G G+ +S A + T+S+
Sbjct: 353 RRRTQRPSGAASLGTLSTTGSSTDSFGSNLNTNTGTGVRGTPASSKASTRSNATRSA 409
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 30.3 bits (65), Expect = 0.70
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = -1
Query: 440 DNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVY 261
++++GL D VN + G + S DN +S Q + + S G
Sbjct: 180 ESSYGLDVD---VNASIGSSSGSDGSSSSDNES-SSNTKSQGTSSKSGSESTAGSIETNT 235
Query: 260 DSGPTEIGTNSSTMAGPTEI--GSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA 87
S TE G+ SS+ A E+ GS+ T T S +S PT + + P+
Sbjct: 236 GS-KTEAGSKSSSSAKTKEVSGGSSGNTYKDTTGSSSGASPSGSPTPTPSTPTPSTPTPS 294
Query: 86 TPGLTRP 66
TP + P
Sbjct: 295 TPTPSTP 301
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAIGTKSSMMGAGPA 87
SGP + T SS GS SL G G+ S++ GP A GAGPA
Sbjct: 93 SGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSALGGGPGAGSALGGGAGAGPA 152
Query: 86 TPG 78
G
Sbjct: 153 LGG 155
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEFVPISVG 252
+G +DE+ I PA+ F+P+ V VDE + I G
Sbjct: 406 IGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNS 150
SG TEIG ++ ++ +GS + T PT GS +
Sbjct: 323 SGQTEIGVSTRCISTSVVVGSEATTNTEPTTTGSRT 358
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 236 TNSSTMAGPTEIGSNSLTMAGPTEMGSNSS 147
TNSS+ TE+ S+T GP+ GSN S
Sbjct: 142 TNSSSGIRETEMEQYSVTTVGPSHCGSNPS 171
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 236 TNSSTMAGPTEIGSNSLTMAGPTEMGSNSS 147
TNSS+ TE+ S+T GP+ GSN S
Sbjct: 142 TNSSSGIRETEMEQYSVTTVGPSHCGSNPS 171
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 458 SGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRG 342
+G DNN+G + D N+N+G +NG + DN G
Sbjct: 89 NGNNNNDNNNGNNKD----NNNNGNNNNGNNNNGNDNNG 123
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 28.3 bits (60), Expect = 2.8
Identities = 25/114 (21%), Positives = 39/114 (34%)
Frame = -1
Query: 476 SATWTGSGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERS 297
+ T TG+GTG G G G G TG+G G +
Sbjct: 154 TGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGG 213
Query: 296 AVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAG 135
+ G +G GT + T G T G+ + T +G ++ + + G
Sbjct: 214 TGTGTGTGGTGTGTG---TGTGTGTGTGGTGTGTGTGTGSGAQKLEAQGNSTGG 264
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 28.3 bits (60), Expect = 2.8
Identities = 25/114 (21%), Positives = 39/114 (34%)
Frame = -1
Query: 476 SATWTGSGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERS 297
+ T TG+GTG G G G G TG+G G +
Sbjct: 154 TGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGG 213
Query: 296 AVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAG 135
+ G +G GT + T G T G+ + T +G ++ + + G
Sbjct: 214 TGTGTGTGGTGTGTG---TGTGTGTGTGGTGTGTGTGTGSGAQKLEAQGNSTGG 264
>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
protein Dof zinc finger protein, Oryza sativa,
EMBL:AB028129
Length = 372
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 437 NNH-GLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDV 321
N+H GL++ G N+N+ NGI TG N G L+D+
Sbjct: 240 NHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGG--GLMDI 277
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA-TP 81
S P+ G S + P S+SL A P+ SS+ GP+ T++ + G+ PA T
Sbjct: 410 SNPSS-GAGFSFLNTPASGPSSSL-FATPSSTAPTSSLF-GPSPTPTQTPLFGSSPASTF 466
Query: 80 GLTRPLVG 57
G T+ L G
Sbjct: 467 GSTQSLFG 474
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = -3
Query: 189 VDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAGDSNGHHGSEGQEE 13
+++ ++ +G++ D D + +V + G +G+ L AG+ +GH + E+
Sbjct: 283 IEDSENEEDGVDDEEDDEEDEEEEEVDNADRGLGGSGSTSRLMNAGEIDGHEQGDDDED 341
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEFVPISVG 252
+G IDE+ I PA+ F+P+ V V+E + I G
Sbjct: 427 IGATTIDEYRKHIEKDPALERRFQPVKVPEPTVEEAIQILQG 468
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.9 bits (59), Expect = 3.8
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGP-TEIGSNSLTMAGPTEMGSN-SSMMAGPTAIGTKSSMMGAGPAT 84
SG IG S GP + S GP G S M G + G S M GP +
Sbjct: 162 SGARPIGFGSPPPMGPGMSMPPPSGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLS 221
Query: 83 PGLTRPLVGP 54
G P++GP
Sbjct: 222 NGPPPPMMGP 231
>At5g23490.1 68418.m02756 expressed protein
Length = 729
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 344 GRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTM 219
G + V + + H +SNG +R + +GP++ ++ S M
Sbjct: 129 GEEATVSNRFESHSEETISNGTVKRAIDGTGPSQFDSSISPM 170
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 27.1 bits (57), Expect = 6.6
Identities = 32/118 (27%), Positives = 48/118 (40%)
Frame = -1
Query: 458 SGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGG 279
SGTG N H ++ + G NG +GS + S + + S++ G
Sbjct: 91 SGTGSTHNGHSSGSNH---SSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIV--G 145
Query: 278 KRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSM 105
+ SG +N S++AGPT G +S GSN S + G T T S+
Sbjct: 146 STHKNHGSG-----SNHSSIAGPTHNGHSS---------GSNHSSIIGSTHNHTAPSL 189
>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 494
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -1
Query: 458 SGTGPFDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVS 288
S PFDN ++ GF+N H G GS G L V + L RS ++
Sbjct: 124 SSANPFDNAFEFGSESGFLNQIHAPISMGF--GSLTQLGNRDLSSVPDFLSARSLLA 178
>At2g22080.1 68415.m02622 expressed protein
Length = 177
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = -3
Query: 237 YELVDDGRPNGDRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSR 58
YE+VD NG+ + D+G D G D + V D +G AG +
Sbjct: 56 YEVVDAVEGNGNNDDSGDDGGEDEEG--SADDAEGKETKKGPVSDPDLNGEAGDNDDEPE 113
Query: 57 AGDSNGHHGSEGQE 16
D N + E
Sbjct: 114 GDDGNDDEDDDNHE 127
>At1g29170.1 68414.m03569 expressed protein ; expression supported by
MPSS
Length = 1016
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 419 NDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVV-YDSGPTE 243
+D +++DNH L ++ S D+ GR ++ + HE V N + + S +
Sbjct: 799 SDTDYLSDNHSLSNSEPWEESSDSHGRKE-QELYDSFHESRHVDNNAEASPLGIKSESSC 857
Query: 242 IGTNSSTMAGPTE 204
+ N S + P E
Sbjct: 858 VAVNLSYLQNPAE 870
>At1g08340.1 68414.m00922 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 GI:3695059
from [Lotus japonicus]; contains Pfam profile PF00620:
RhoGAP domain
Length = 331
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = -3
Query: 243 DRYELVDDGRPNGDRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQAL 64
D E +D + + ++ +G+G+ +I + + S+ KVV D +SG+ +
Sbjct: 251 DNEEEEEDEEEEEEEEDEDEDEEEEGDGVYIIKEEEA-SEIIKVVADEHKSGSIKSEFEG 309
Query: 63 SRAGDSNGHHG 31
S A DS G +G
Sbjct: 310 SSATDSKGDNG 320
>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 146
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = +3
Query: 126 RCRTCHHR*VRAHFRRTCHCQRIRTYLRWACHRR 227
RCR CH ++F C C + C +R
Sbjct: 19 RCRICHEEEAESYFEAPCSCSGTIKFAHRDCIQR 52
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 365 TGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIG 198
TG+ D G + D +N+L E S + G R V + TEI + E+G
Sbjct: 411 TGTDDAYGSKEIDDRENELEEGSDANGGDNEREVREK-ETEIDKEVAQGDNEREVG 465
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 246 GDRYELVDDGRPNGDRFEFVDNGRS-DGNGLELIYDGRSDSDRYKVVDDGSRS 91
GD Y V++ G+ + D G DGNGLE++ + S Y D GS S
Sbjct: 310 GDVY--VEEANDEGEDVDGNDEGEDVDGNGLEIVACVDNLSVAYSESDFGSSS 360
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = -1
Query: 467 WTGSGTGPFDNNHGLSNDFGFVNDNHGLRDNG---IDTGSGDNRGRAS 333
W GSG G G S D D G D G GSGD+ G S
Sbjct: 9 WFGSGDGGGSGGGGGSGDGSGSGDGGGSGDGGGSRDSDGSGDSSGGGS 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,341,119
Number of Sequences: 28952
Number of extensions: 179315
Number of successful extensions: 832
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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