Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0815
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   5.5  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 102 LVFYTEYPEEHEQNEIHKILE 164
           L+ Y  YP+E + + +H+ILE
Sbjct: 301 LLSYNHYPQESDMSHVHQILE 321


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 492  KRQIYVLL--LYKIQACVSNKFGLCLFYEI*KFLLLFQIYV*FFSMTCII 349
            +  I+++L   Y I  CV   +GL  +Y    F  +F + V   S+TC I
Sbjct: 1300 RNSIFLILSICYTINICVK-VYGLSFYYFFHSFWNMFDVVVTLGSLTCNI 1348


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 72   REHLDLSALALVFYTEYPEEHEQNEIH 152
            R +L ++AL + FY ++P   + N  H
Sbjct: 1210 RSNLAIAALLISFYPQFPRTTQDNRAH 1236


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 153 CVFRFVHVLRGIQYKTLVPKLTSPGVLLSIPLLQKFQILYLV-VPSMDIYLM 1
           C    VHVL+ I+Y+    +L +  ++ ++ +L     L L   P+  +Y++
Sbjct: 93  CFQNLVHVLQDIRYQLSFARLRNSDLVTALDILSTGTSLRLANAPTSKLYML 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,498
Number of Sequences: 5004
Number of extensions: 52558
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)