Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0815
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216...    27   9.8  
01_06_0441 + 29417004-29417114,29417213-29417311,29417405-294175...    27   9.8  

>12_01_0288 -
           2160981-2161076,2161150-2161236,2161333-2161419,
           2161641-2161726,2161805-2161908,2162618-2162704,
           2162790-2162913,2163058-2163176,2163268-2163397,
           2163583-2163671,2163804-2163892,2164579-2164672,
           2164778-2164857,2164952-2165041,2166307-2166393,
           2166495-2166539,2166966-2167042,2167120-2167225,
           2167383-2167464,2167553-2167624,2168106-2168183,
           2168259-2168349,2168826-2168979
          Length = 717

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 351 LYMSY*RIIHIFETVTEISIFH 416
           +Y+SY  + HI+E V ++S+ H
Sbjct: 321 VYISYLPLAHIYERVNQVSVVH 342


>01_06_0441 +
           29417004-29417114,29417213-29417311,29417405-29417534,
           29417673-29417765,29417892-29417982,29418166-29418222,
           29419200-29419320,29420183-29420331,29420675-29420891
          Length = 355

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  CLEQPNIISGISAGVVCLREHL 83
           C    +I+SG+ AG++ L EHL
Sbjct: 249 CTSVASIVSGVVAGMIALDEHL 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,532
Number of Sequences: 37544
Number of extensions: 246969
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)