Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0815
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical ...    29   2.9  
U23511-1|AAC46791.1|  859|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF025457-12|AAY55849.1|  244|Caenorhabditis elegans Hypothetical...    27   8.8  

>AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical
           protein Y73E7A.2 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 112 ILNTPKNMNKTKYTRYWKISISNLIQNQMA 201
           ILNTPK+MN T ++ + K SI   I   +A
Sbjct: 306 ILNTPKSMNNTDFSVFEKGSILGQINKVLA 335


>U23511-1|AAC46791.1|  859|Caenorhabditis elegans Hypothetical
           protein C32D5.3 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 523 KKHVHHQLIKKTTNLCPVIIQNPSLCK 443
           K++  H ++ K  NL   +I NPSLC+
Sbjct: 583 KRNCIHNMVAKYLNLSAQLIANPSLCQ 609


>AF025457-12|AAY55849.1|  244|Caenorhabditis elegans Hypothetical
           protein C08E3.14 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 151 TRYWKISISNLIQNQMAY*IQIYTFEILK 237
           T+ WKI+ SNL  N+++  +  +TF  +K
Sbjct: 120 TQKWKITTSNLHVNELSLAVSSFTFGCVK 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,409
Number of Sequences: 27780
Number of extensions: 282608
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)