Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0814
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 134 6e-33
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 134 6e-33
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 134 6e-33
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 3.3
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 4.4
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 134 bits (324), Expect = 6e-33
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 EAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 181
EAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177
Query: 182 GNLCMITGGRNLGRVGTIVSRERH 253
M+TGGRN+GRVGTIV RE H
Sbjct: 178 SAQVMVTGGRNMGRVGTIVHREHH 201
Score = 80.2 bits (189), Expect = 1e-16
Identities = 34/57 (59%), Positives = 48/57 (84%)
Frame = +1
Query: 256 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 426
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 134 bits (324), Expect = 6e-33
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 EAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 181
EAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177
Query: 182 GNLCMITGGRNLGRVGTIVSRERH 253
M+TGGRN+GRVGTIV RE H
Sbjct: 178 SAQVMVTGGRNMGRVGTIVHREHH 201
Score = 81.0 bits (191), Expect = 8e-17
Identities = 34/57 (59%), Positives = 48/57 (84%)
Frame = +1
Query: 256 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 426
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 134 bits (324), Expect = 6e-33
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 EAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 181
EAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177
Query: 182 GNLCMITGGRNLGRVGTIVSRERH 253
M+TGGRN+GRVGTIV RE H
Sbjct: 178 SAQVMVTGGRNMGRVGTIVHREHH 201
Score = 80.2 bits (189), Expect = 1e-16
Identities = 34/57 (59%), Positives = 48/57 (84%)
Frame = +1
Query: 256 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 426
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 1.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 112 QSQRFHPVRHCNYED 156
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.8 bits (54), Expect = 3.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -3
Query: 333 DYEHVVQPRGEGVSRGVLDVHNVEGAGCLSRDTMVPTRP----KLRPPVIIHKFPDSNLM 166
DY H RG +S ++DV ++ S+ +P +P KLR + K D
Sbjct: 181 DYMH----RGRSISSPMIDVEHINSTAVPSKTKNLPEKPKRSHKLRNSITFAKIEDHPER 236
Query: 165 KS 160
KS
Sbjct: 237 KS 238
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 210 VTWGAWAPSCPARDIRLLRHCAHQGLHGTHL 302
VT G WA P ++ L + HQ LH +L
Sbjct: 401 VTKGRWAQFFPITNVLWLHYLIHQLLHKKNL 431
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 247 LAGHDGAHAPQVTASRDHTQVPGLKLDEVH 158
LAGH A VTAS+D +++ LK D +
Sbjct: 214 LAGHSDVLAG-VTASKDRSKILDLKADRAY 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,727
Number of Sequences: 5004
Number of extensions: 41301
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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