Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0814
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 9e-30
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2) 28 4.5
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 5.9
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 7.8
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 27 7.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 126 bits (304), Expect = 9e-30
Identities = 53/84 (63%), Positives = 69/84 (82%)
Frame = +2
Query: 2 EAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 181
EAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++
Sbjct: 542 EAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDT 601
Query: 182 GNLCMITGGRNLGRVGTIVSRERH 253
GN+ M+ GGRN+GRVG + RE+H
Sbjct: 602 GNMAMVVGGRNMGRVGMVTHREKH 625
Score = 102 bits (244), Expect = 2e-22
Identities = 43/58 (74%), Positives = 53/58 (91%)
Frame = +1
Query: 253 SGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 426
+GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 626 AGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 315 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 407
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 316 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 429
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 316 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 429
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 321 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 419
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2)
Length = 207
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 182 GNLCMITGGRNLGRVGTIVSRERHPAPS--TLCTSRTPR 292
G + + G RN+G GT ++ H +PS L T RT R
Sbjct: 138 GQVGLTGGNRNMGTSGTYRRKQEHGSPSHNLLSTMRTVR 176
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 230 TIVSRERHPAPSTLCTSRTPRDTPSP 307
T R+R+ P L RTP TPSP
Sbjct: 1641 TSEQRQRYQRPPALSPQRTPTTTPSP 1666
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 294 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 422
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 416 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 255
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 222 AWAPSCPARDIRLLRHCAHQGLHGTHLRHEVEQRV-HNRQG 341
AWAP P RL H+ H++H + +++ H + G
Sbjct: 21 AWAPYRPLEVERLFAFSEHRASIAEHIKHAIAKQIKHAKSG 61
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +3
Query: 264 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 392
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 442 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 299
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 303 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 434
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 303 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 443
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = -2
Query: 313 TSWRRCVPWSP*CAQCRRSRMSLAGH--DG---AHAPQVTASRDHTQVPGLKLDEVHNLR 149
T +R P P + +R S H DG HA +T H +V L+ VH +R
Sbjct: 288 TKLKRSTPEPPKSKPVKLNRRSFTNHPSDGNKTTHAGTITQQSKHVEVQELRPSPVHGVR 347
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 239 SRERHPAPSTLCTSRTPRDTPSPR 310
SRER P+ S SR R +PSPR
Sbjct: 1053 SRERRPSSSPPRRSRPQRTSPSPR 1076
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,468
Number of Sequences: 59808
Number of extensions: 392701
Number of successful extensions: 1226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -