Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0813
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    27   0.93 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.2  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   3.8  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   5.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    24   8.7  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  RTSFVFNNVLISS*FSFITVVYTD*IKLPNFNT 117
           RT+++  N LISS F  +T    D I+   F+T
Sbjct: 298 RTAYIMTNTLISSSFGALTWAIIDYIRYRKFST 330


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 IGKIANKLEFEFRTSDTNEIWGSFLCITPNLTV 217
           +GK    +      ++T+ IWG FL I P  T+
Sbjct: 871 LGKTVQSISVMAYLAETHNIWGPFLVIAPASTL 903


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 268 NSLSCNRHVVL*LYIREHC*IRSYT*KTT 182
           +++ C  H V  +Y+  HC +RS T  TT
Sbjct: 30  STIFCVHHRVRYIYVPRHCLLRSLTYATT 58


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 258  HATGTWSYNYIFVNTVKLGVIHK 190
            H   T   NY F+N +K GV HK
Sbjct: 1405 HLYYTEPSNYAFMNLLKAGVFHK 1427


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -3

Query: 222 VNTVKLGVIHKKLPQISFVSLVRNSNSNLFAIFPMRVEIRQFYLISIYYSN 70
           +N  ++ +++ +LP++S  +L RN  SN+      RV +   +  +  Y N
Sbjct: 30  LNEEEIELLNTRLPKLSKKALARNRYSNIVPYENTRVRLDPMWKEACDYIN 80


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 5   KSLKIVLLLFLIMF*YPVSFPLL 73
           +SL+ +LLLFL    YP +F LL
Sbjct: 283 QSLETILLLFLYKIRYPENFFLL 305


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 ISTRIGKIANKLEFEFRTSDTNE 175
           +  R   I+ K E EFR ++TNE
Sbjct: 524 VKARAVTISRKREHEFRVAETNE 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,300
Number of Sequences: 5004
Number of extensions: 33565
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)