Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0813
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical pr...    30   0.62 
Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z79598-6|CAD44108.1|   89|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z69790-1|CAA93654.2|  427|Caenorhabditis elegans Hypothetical
           protein F33C8.2 protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 222 VNTVKLGVIHKKLPQISFVSLVRNSNSNLFAIFPMRVEIRQFYLISI 82
           VN +++ V  + LP+ +  +        L+A++P  +E+RQ  ++ I
Sbjct: 274 VNALRVEVAEQNLPETTRSAFFEKLQKMLWAMYPFNLELRQLKMVEI 320


>Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical
           protein R11.3 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 258 HATGTWSYNYIFVNTVKLG 202
           H TG + Y YI VNTV LG
Sbjct: 374 HLTGDYRYIYIKVNTVHLG 392


>Z79598-6|CAD44108.1|   89|Caenorhabditis elegans Hypothetical
           protein C44H4.8 protein.
          Length = 89

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 179 KSHSYHWSEIQILTCLLFFQCVLKFGNFI*SVYTTVIK 66
           KSH   W+ I ++ C++        GNFI    T+V K
Sbjct: 26  KSHWPTWAMILVVVCIILSLLAFFLGNFITKKTTSVRK 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,234,178
Number of Sequences: 27780
Number of extensions: 176762
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)