Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0812
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   6.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.4  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 158 YEYKSERFLYTYHTEYIFVFTNYLSSVPSVYLDRNI 265
           +++ S    +TYHT        Y S+   V++D NI
Sbjct: 158 HQFLSSMRHFTYHTNVNLTVQGYTSAEAPVFVDENI 193


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 170 SERFLYTYHTEYIFVFTNYLSSVPSVY---LD-RNIEQIETVASTCGLYSI 310
           S  ++Y++H EY+ + +N  S+    Y   LD +N+++ E +   C +  I
Sbjct: 167 SNEYVYSFHLEYVPLESNTFSASALEYSKNLDLKNLDESEVLMDGCQVVPI 217


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +2

Query: 101 ILYYILYFGATKKYLF-----LSHYEYKSERFL-YTYHTEYIFVFTNYLSSVPSVYLDRN 262
           +L+Y+  F  T  +L       +H ++  +++   T   EYI +  + +S+  S YLD N
Sbjct: 27  LLFYLSLFSLTNLFLIQKLFHANHTQHPLKKYFGETCLLEYIQIILSIVSAALSFYLDTN 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,262
Number of Sequences: 5004
Number of extensions: 51687
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)