Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0812
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)                 30   2.2  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)
          Length = 527

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +2

Query: 62  IYSVCSISKIHFSILYYILYFGATKKYLFLSHYEYKSERFLYTYHTEYIFVFTNYLSSV 238
           +Y   S+ K     LY  L F  T+ Y FLS  E +  RFL    T    ++T +LS V
Sbjct: 389 LYRFLSLVKTRLYRLYTFLSFVKTRLYRFLSLVETRLYRFLSLVKTRLYRLYT-FLSFV 446


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 113 ILYFGATKKYLFLSHYEYKSERFLYTYHT 199
           +L F  TK+ L + HY +K +R LYTY+T
Sbjct: 188 VLNFTHTKRALHVLHYTHK-KRALYTYYT 215


>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 95  FSILYYILYFGATKKYLFLSHYEYKSERFLYTYHTEYIFVFTNY-LSSVPSVYLD 256
           FSIL   L +     ++  S ++   + FL  Y    IFVF N+ LS + +VY D
Sbjct: 309 FSILLGKLDYN--NDFVLTSDFQRLVQLFLLCYGVSMIFVFMNFLLSIINNVYAD 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,910
Number of Sequences: 59808
Number of extensions: 333511
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)