Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0812
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    29   4.5  
AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF016681-9|AAB66172.2|  225|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 129 LRKSIYFSHTTNINQKGFYIPIIQNTFLFLRIIFLQFHLCI*IETLNKLRRSLVHAVYIV 308
           L  S+  S  T  NQK F+I  ++ T + L ++ L F +        +  + L +  +I+
Sbjct: 240 LAPSLLTSSQTRSNQKHFFIGTLKQTGVALSVMILAFSIATLTFKSKQSTQELTNLYFII 299

Query: 309 F 311
           F
Sbjct: 300 F 300


>AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical
           protein BE0003N10.2 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 56  CDIYSVCSISKIHFSILYYILYFGATKKYLFLSHYE 163
           CDI++VC + K++F +L   L   +  K L +++ E
Sbjct: 363 CDIHTVCGLLKLYFRLLPQQLIPFSVHKQLLVAYQE 398


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 149 LSHYEYKSERFLYTYHTEYIFVFTNYLSSVPSVYLDRNIEQIETVASTCGLYSILKG 319
           L H    S   ++  H +  FVF  Y+    S YL++N+  ++++     L+ +L+G
Sbjct: 285 LRHANIVSLHDIFYQHHQLTFVF-EYMKMDLSKYLEQNVYGLDSIDIKLLLFQLLRG 340


>AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC123.4c protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 149 LSHYEYKSERFLYTYHTEYIFVFTNYLSSVPSVYLDRNIEQIETVASTCGLYSILKG 319
           L H    S   ++  H +  FVF  Y+    S YL++N+  ++++     L+ +L+G
Sbjct: 129 LRHANIVSLHDIFYQHHQLTFVF-EYMKMDLSKYLEQNVYGLDSIDIKLLLFQLLRG 184


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 149 LSHYEYKSERFLYTYHTEYIFVFTNYLSSVPSVYLDRNIEQIETVASTCGLYSILKG 319
           L H    S   ++  H +  FVF  Y+    S YL++N+  ++++     L+ +L+G
Sbjct: 269 LRHANIVSLHDIFYQHHQLTFVF-EYMKMDLSKYLEQNVYGLDSIDIKLLLFQLLRG 324


>AF016681-9|AAB66172.2|  225|Caenorhabditis elegans Hypothetical
           protein F22E5.6 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 254 LNTQMELKKDNS*KQKCILYDR---YIKTFLIYIRSVREINTFS*RQNKVYNIIY*NEFY 84
           L T + ++KD+S    CI  DR   + +  L Y+R   +++     + +V  I+   +FY
Sbjct: 35  LETDIPIQKDDS---NCIFIDRSPRHFEKILNYLRDGADVDLLPESEKEVREILKEAQFY 91

Query: 83  LL 78
           LL
Sbjct: 92  LL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,172
Number of Sequences: 27780
Number of extensions: 275662
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)