BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0812 (733 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 30 1.4 At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 29 3.2 >At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) identical to AUX1 GI:1531758 from [Arabidopsis thaliana] Length = 485 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +2 Query: 89 IHFSILYYILY-FGATKKYLFLSHYEYKSERFLYTYHTEYIFVFTNYLSSVPSVY 250 ++F+ ILY FG + + H +K ++F Y Y ++VFT + S +VY Sbjct: 234 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSAAAVY 288 >At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile PF04720: Protein of unknown function (DUF506) Length = 281 Score = 29.1 bits (62), Expect = 3.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 336 SYHNHDPFRILYKPHVLATVSICSMFRSK 250 S+ + DP+R L HVL V + S FRS+ Sbjct: 82 SFSDSDPYRNLLLAHVLRAVEVYSGFRSR 110 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,610,525 Number of Sequences: 28952 Number of extensions: 221978 Number of successful extensions: 387 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 387 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1604469728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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